Plant Circular RNA Database

Detail information of AT4G32360_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT4G32360_circ_g.3
					
						ID in PlantcircBase
						ath_circ_034029
					
						Alias
						Ath_circ_FC2923
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15622383-15624417  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT4G32360						
					
						Parent gene annotation
						
							NADPH:adrenodoxin oxidoreductase, mitochondrial
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G32360_circ_g.1 AT4G32360_circ_g.2 AT4G32360_circ_g.4 AT4G32360_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G32360.6:8
AT4G32360.1:8
AT4G32360.7:8
AT4G32360.9:8
AT4G32360.4:7
AT4G32360.3:7
AT4G32360.8:8
AT4G32360.5:8
AT4G32360.2:7

General Information
CircRNA Name	AT4G32360_circ_g.3
ID in PlantcircBase	ath_circ_034029
Alias	Ath_circ_FC2923
Organism	Arabidpsis thaliana
Position	chr4: 15622383-15624417 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT4G32360
Parent gene annotation	NADPH:adrenodoxin oxidoreductase, mitochondrial
Parent gene strand	+
Alternative splicing	AT4G32360_circ_g.1 AT4G32360_circ_g.2 AT4G32360_circ_g.4 AT4G32360_circ_g.5
Support reads	1
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G32360.6:8 AT4G32360.1:8 AT4G32360.7:8 AT4G32360.9:8 AT4G32360.4:7 AT4G32360.3:7 AT4G32360.8:8 AT4G32360.5:8 AT4G32360.2:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGACATATCACAGACTGAACCTGGCTTATACGTATGTGGGTGGCTCAAAAGAGGACCAGTAGGG
ATAATTGCCACAAACCTCTACTGTGCTGAAGAAACGagtttgagtggtatatactctgcaagag
aattcgtctggtggtataatgggcatcctgactacagtagtttgaaacctgacttgaaaacgtc
tgactcag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGTTTGAGTGGTATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCTGACTACA
GTAGTTTGAAACCTGACTTGAAAACGTCTGACTCAGCTGTCATTCTTGGCCAGGTACTCTAATA
TATGGTGTGCGATTAATAGAGCCTATTAGTTGTTAGTTAGCAGGATGTACATATCAACAACAGT
TTGATACCGAAATTTTCTAGTAAATGTATTTCTCAAGACCTCTCTGACATATGATCCTTCAAAA
CTTAGGGTAATGTAGCTCTAGATGTTGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTC
AACTGATATTGCTACACATGCTTTATCTGCGCTGAAAGAAAGTTCTATAAGGTCCCATTTAACC
GTTTAACTAGTTGAATCTTGTTCCTTTCCATCTTTCCTATAGTTGAAAACCAACTACAGTCCCT
GATACAAAGTTGTAATGTGTTCAGGAAGGTGTATCTCATCGGAAGACGGGGGCCAGTTCAAGCA
GCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGTAACATTCATATATAAACCATATACTAAT
CTTTTTGATTTTTTTTTTGATAGATCTCAGTGGGATCATCCCACATAAGAAATAACATAAGAAA
TTGTGTTTGGGTTTTATAAGAATGTGGTTTGGTGTGATGGATTTAGGTGTGTGCTGCCATTTTT
CAGACCTTGGGTTCTATTGTTTTCTTATATTTTGTTGAAGTACTTGCTGAACACCTCTATCTTT
AATGTTACTGTCTACTCTGTTTGTTCTGCTGGATATGGGACTGCCTTGGTGATTATTTTGCTGC
AGTAGTTGATACTTGATACTATATAAGATGTTGAATAGCAAAAGTTTACTCCTTTGCCTTAATT
TACCTGTCTTGACCTTCTCGGGGTTTTGTGAGATAATAAGTATTGTCTCTATTTTCTGATATTC
CTATCTTTCCGTTGGTGCATTATCTCTAATGTTTTGTTGGCATTGGCGTTTGCTATTTTCCCAT
TGGTAAGAATATAAACGCATATCTCTTTATAATACAGGGATTAAGAACTTGCACATTCGAATAA
AGCAGACTGACTTGAGTGTAACTCCTGCTGATGAGGTACTTGTGTTACTGACTTTCAATTAAAG
TAAGGCTGAACCCTGTTATTTGCATTTTTAGTAAATTTGTTTATACCTCCACGAACTGTATCTT
GACACTCTTCTTTTTTTCGAAGGAAGAAATGAAAACTAGTAGAGCCAGGAAGAGGATCTATGAA
TTATTGTCCAAGGCTGCAGCAGCAGCAAAAACATCCGAAGCAGACCCTGATCAACGAGAGCTGC
ACTTTGTTTTCTTCCGCCAACCTGACCAGTTCTTAGAGTCAGATGAAAGAAAGGGACATGTTTC
CGGTGTAAACTTGCAAAAAACCATTCTTGAAAGTAAGTGCACCTTAGTTATTCTGTAGATTGCT
TAGCTGGAGACACTAGAAATAGAATGGTGATTTCTTAGGATACAATAGTATATTTTGCTAACAT
TTCATCCATATCTTTCGTAACTTGTAGGTGTTGGAACCGGAAAGCAAATTGCAGTTGGTACAGG
AGAGTTCGAGGATCTTAACTGCAGGTAATGTGCTCTCTAATGAAAGGTCTTAAGTGCATATCTC
TTGTAACTGTTAAACAAGAACTATAACAAATCAAATGAAAGTATGTTCAATTTTGCAGTATGGT
GCTGAAGGCCATTGGTTACAAGTCTGTTCCAGTCAATGGTTTACCATTTGATCACAAGAAAGGT
GGTATAATATGAAAGTGTTGTGTAATTAGTGTCTACGAAGAAAAAAAAATGAAGTTGTTCGGAT
TTTTTTGACTCTGCCTCAATTGTTTGTTTCAAGGTGTTGTCCCAAATGTAAAGGGTCGAGTGGT
TAGTCACACGTCAGGAGACATATCACAGACTGAACCTGGCTTATACGTATGTGGGTGGCTCAAA
AGAGGACCAGTAGGGATAATTGCCACAAACCTCTACTGTGCTGAAGAAACG
						
					

			
		

Sequences
Splice junction sequence	AGACATATCACAGACTGAACCTGGCTTATACGTATGTGGGTGGCTCAAAAGAGGACCAGTAGGG ATAATTGCCACAAACCTCTACTGTGCTGAAGAAACGagtttgagtggtatatactctgcaagag aattcgtctggtggtataatgggcatcctgactacagtagtttgaaacctgacttgaaaacgtc tgactcag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGTTTGAGTGGTATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCTGACTACA GTAGTTTGAAACCTGACTTGAAAACGTCTGACTCAGCTGTCATTCTTGGCCAGGTACTCTAATA TATGGTGTGCGATTAATAGAGCCTATTAGTTGTTAGTTAGCAGGATGTACATATCAACAACAGT TTGATACCGAAATTTTCTAGTAAATGTATTTCTCAAGACCTCTCTGACATATGATCCTTCAAAA CTTAGGGTAATGTAGCTCTAGATGTTGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTC AACTGATATTGCTACACATGCTTTATCTGCGCTGAAAGAAAGTTCTATAAGGTCCCATTTAACC GTTTAACTAGTTGAATCTTGTTCCTTTCCATCTTTCCTATAGTTGAAAACCAACTACAGTCCCT GATACAAAGTTGTAATGTGTTCAGGAAGGTGTATCTCATCGGAAGACGGGGGCCAGTTCAAGCA GCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGTAACATTCATATATAAACCATATACTAAT CTTTTTGATTTTTTTTTTGATAGATCTCAGTGGGATCATCCCACATAAGAAATAACATAAGAAA TTGTGTTTGGGTTTTATAAGAATGTGGTTTGGTGTGATGGATTTAGGTGTGTGCTGCCATTTTT CAGACCTTGGGTTCTATTGTTTTCTTATATTTTGTTGAAGTACTTGCTGAACACCTCTATCTTT AATGTTACTGTCTACTCTGTTTGTTCTGCTGGATATGGGACTGCCTTGGTGATTATTTTGCTGC AGTAGTTGATACTTGATACTATATAAGATGTTGAATAGCAAAAGTTTACTCCTTTGCCTTAATT TACCTGTCTTGACCTTCTCGGGGTTTTGTGAGATAATAAGTATTGTCTCTATTTTCTGATATTC CTATCTTTCCGTTGGTGCATTATCTCTAATGTTTTGTTGGCATTGGCGTTTGCTATTTTCCCAT TGGTAAGAATATAAACGCATATCTCTTTATAATACAGGGATTAAGAACTTGCACATTCGAATAA AGCAGACTGACTTGAGTGTAACTCCTGCTGATGAGGTACTTGTGTTACTGACTTTCAATTAAAG TAAGGCTGAACCCTGTTATTTGCATTTTTAGTAAATTTGTTTATACCTCCACGAACTGTATCTT GACACTCTTCTTTTTTTCGAAGGAAGAAATGAAAACTAGTAGAGCCAGGAAGAGGATCTATGAA TTATTGTCCAAGGCTGCAGCAGCAGCAAAAACATCCGAAGCAGACCCTGATCAACGAGAGCTGC ACTTTGTTTTCTTCCGCCAACCTGACCAGTTCTTAGAGTCAGATGAAAGAAAGGGACATGTTTC CGGTGTAAACTTGCAAAAAACCATTCTTGAAAGTAAGTGCACCTTAGTTATTCTGTAGATTGCT TAGCTGGAGACACTAGAAATAGAATGGTGATTTCTTAGGATACAATAGTATATTTTGCTAACAT TTCATCCATATCTTTCGTAACTTGTAGGTGTTGGAACCGGAAAGCAAATTGCAGTTGGTACAGG AGAGTTCGAGGATCTTAACTGCAGGTAATGTGCTCTCTAATGAAAGGTCTTAAGTGCATATCTC TTGTAACTGTTAAACAAGAACTATAACAAATCAAATGAAAGTATGTTCAATTTTGCAGTATGGT GCTGAAGGCCATTGGTTACAAGTCTGTTCCAGTCAATGGTTTACCATTTGATCACAAGAAAGGT GGTATAATATGAAAGTGTTGTGTAATTAGTGTCTACGAAGAAAAAAAAATGAAGTTGTTCGGAT TTTTTTGACTCTGCCTCAATTGTTTGTTTCAAGGTGTTGTCCCAAATGTAAAGGGTCGAGTGGT TAGTCACACGTCAGGAGACATATCACAGACTGAACCTGGCTTATACGTATGTGGGTGGCTCAAA AGAGGACCAGTAGGGATAATTGCCACAAACCTCTACTGTGCTGAAGAAACG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.111724185

Conservation Information
Conserved circRNAs	NA
PMCS	0.111724185

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15623627-15624414(+)
						
						Potential amino acid sequence
						
							MKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSGVNLQKTIL
ESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVSHTSGDISQ
TEPGLYVCGWLKRGPVGIIATNLYCAEETSLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAV
ILGQGNVALDVARILLRPTTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREV
LGIKNLHIRIKQTDLSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQ
PDQFLESDERKGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPF
DHKKGVVPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETSLSGIYSAREF
VWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRPTTELASTDIATHALSALKESSI
RKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTDLSVTPADEEEMKTSRARKRIYELLSK
AAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSGVNLQKTILESVGTGKQIAVGTGEF
EDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPV
GIIATNLYCAEETSLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILL
RPTTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTDLS
VTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSG
VNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVS
HTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEET(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15623627-15624414(+)
Potential amino acid sequence	MKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSGVNLQKTIL ESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVSHTSGDISQ TEPGLYVCGWLKRGPVGIIATNLYCAEETSLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAV ILGQGNVALDVARILLRPTTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREV LGIKNLHIRIKQTDLSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQ PDQFLESDERKGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPF DHKKGVVPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETSLSGIYSAREF VWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRPTTELASTDIATHALSALKESSI RKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTDLSVTPADEEEMKTSRARKRIYELLSK AAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSGVNLQKTILESVGTGKQIAVGTGEF EDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPV GIIATNLYCAEETSLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILL RPTTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTDLS VTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSG VNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVS HTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEET(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT4G32360_circ_g.3

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