Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037775_circ_g.2 |
ID in PlantcircBase | zma_circ_009062 |
Alias | zma_circ_0002332, GRMZM2G076006_C1 |
Organism | Zea mays |
Position | chr6: 137242494-137242861 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d037775 |
Parent gene annotation |
Probable lactoylglutathione lyase chloroplastic |
Parent gene strand | - |
Alternative splicing | Zm00001d037775_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037775_T004:2 Zm00001d037775_T003:2 Zm00001d037775_T005:2 Zm00001d037775_T001:2 Zm00001d037775_T002:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_027105* osi_circ_006071* |
PMCS | 0.365341223 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
137242851-137242496(-) 137242523-137242778(-) |
Potential amino acid sequence |
MMGYGPEDKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAEAIRVNGGQITREPGPLPGI TTKITACTDPDGWKTYTIAMMGYGPEDKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAE AIRVNGGQITREPGPLPGITTKITACTDPDGWKTYTIAMMGYGPEDKNAVLELTYNYGVKEYDK GNAYAQIAISTDDVYKTAEAIRVNGGQITREPGPLPGITTKITACTDPDGWKTYTIAMMGYGPE DKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAEAIRVNGGQITREPGPLPGITTKITAC TDPDGWKT(-) MHRSRWLENIYDCDDGIWSRRQKCCIGVDLQLWGEGI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress; regulating the response to N deficiency (validated) |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |