Detail information of Solyc07g044850.2_circ_igg.1


General Information
CircRNA Name Solyc07g044850.2_circ_igg.1
ID in PlantcircBase sly_circ_002342
Alias SL3.0ch07:58037102|58042012
Organism Solanum lycopersicum
Position chr7: 57909762-57914672  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc07g044850.2_circ_g.1 Solyc07g044850.2_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCC
TCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGggatttaggcctactattccaacttttc
agttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacg
atgatgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGA
CGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCT
CCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGG
TGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTT
GTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGA
CTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTAT
GCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTG
GATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGC
ACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAA
CAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGG
GTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGAT
TGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGA
CTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGAT
CATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGG
GTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAG
AGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTA
CTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACT
TGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAG
TTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGA
TCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTAT
TTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCT
TTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGG
CTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAA
GTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCAT
TCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTC
ATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAG
ACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAA
ACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTAC
ATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCC
CACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTC
CATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCC
TTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCAC
CCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGA
CATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAA
GTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGA
GTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATG
ATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGC
TAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGAT
CAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAAC
TGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATAC
TGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAG
AAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACA
TCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAA
AAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATG
TGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATAT
CTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACT
TCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGAT
TGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACC
ATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTAC
TCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTT
TGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTT
CCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAG
CATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAAC
ATCTAAGACTGAGTTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGG
ATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCC
CAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGA
TTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAG
TTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAG
AATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCA
AATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTT
ATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGC
CGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGC
ATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAA
GCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTAT
GTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTT
CAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTT
TCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATT
TTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGT
ATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTC
ATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGT
GGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTT
AGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTT
GTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGT
CTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTA
CTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAA
AGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.147173963
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020