Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0647700_circ_g.2 |
| ID in PlantcircBase | osa_circ_002899 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 26108425-26110594 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0647700 |
| Parent gene annotation |
Epoxide hydrolase family protein. (Os01t0647700-01) |
| Parent gene strand | + |
| Alternative splicing | Os01g0647700_circ_g.1 Os01g0647700_circ_g.3 Os01g0647700_circ_g.4 |
| Support reads | 1 |
| Tissues | shoot, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os01t0647700-01:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.371342657 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
26108591-26110591(+) 26108624-26110579(-) |
| Potential amino acid sequence |
MFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLNRS FSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHG FGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFC SDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTP LRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLS SKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTPYS GKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFPEI HHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVL SVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGW GLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRASG DSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATKLT TDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSSKS TQVMASRLVNSILAYKNAYPGCYKTPRSPTPYSGKFYSRSDSETKRKSVAHDDRDIPISFLADG DSMFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLN RSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLV HGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLIS FCSDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLH TPLRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTV LSSKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTP YSGKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFP EIHHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTP VLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRP GWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRA SGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATK LTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSS KSTQVMASRLVNS(+) MHSDPLASNEHAITVCKETDWNIPIVVSNRFSLRLTVTPRIKFSTVWCGRSRSLVASRICILVC QNRIYKP*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |