Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os01g0647700_circ_g.2 |
ID in PlantcircBase | osa_circ_002899 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 26108425-26110594 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0647700 |
Parent gene annotation |
Epoxide hydrolase family protein. (Os01t0647700-01) |
Parent gene strand | + |
Alternative splicing | Os01g0647700_circ_g.1 Os01g0647700_circ_g.3 Os01g0647700_circ_g.4 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0647700-01:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.371342657 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
26108591-26110591(+) 26108624-26110579(-) |
Potential amino acid sequence |
MFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLNRS FSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHG FGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFC SDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTP LRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLS SKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTPYS GKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFPEI HHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVL SVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGW GLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRASG DSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATKLT TDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSSKS TQVMASRLVNSILAYKNAYPGCYKTPRSPTPYSGKFYSRSDSETKRKSVAHDDRDIPISFLADG DSMFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLN RSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLV HGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLIS FCSDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLH TPLRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTV LSSKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTP YSGKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFP EIHHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTP VLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRP GWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRA SGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATK LTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSS KSTQVMASRLVNS(+) MHSDPLASNEHAITVCKETDWNIPIVVSNRFSLRLTVTPRIKFSTVWCGRSRSLVASRICILVC QNRIYKP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |