Detail information of Os01g0647700_circ_g.2


General Information
CircRNA Name Os01g0647700_circ_g.2
ID in PlantcircBase osa_circ_002899
Alias NA
Organism Oryza sativa
Position chr1: 26108425-26110594  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0647700
Parent gene annotation Epoxide hydrolase family protein. (Os01t0647700-01)
Parent gene strand +
Alternative splicing Os01g0647700_circ_g.1 Os01g0647700_circ_g.3 Os01g0647700_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0647700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAG
TCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCTattctggcatacaagaatgcatatcctg
gatgctacaagactcctcgatctcccacaccatacagtggaaaattttattctaggagtgacag
tgagacga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1251
Transcript exons: 26108425-26109141,26109630-26109758,26109886-26110089,26
110394-26110594
ATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACCATACA
GTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCACGACGATAG
GGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTGCCAGGGGATCACT
GTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTACAGACACTTTTCCAGAAA
TCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACAGAGACATGATAGCCCACCATC
AGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTTCAGCCATCAATACCATCAGACATCG
CTATATGCACCATTGTTGGTAGAGCCAGTGACCTCTCCAACTTTGTCGGATGACACCCCTGTTC
TTAGTGTTGATGATGGCAGTGCTGATGTATGTTTGAAACCTATGGGATTTGATCTTGAGGCTGG
AGAACAGGGGAAATTTGCTGTTGTTTTGGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGA
CACGTTACAAATTTGCTTTCTCGTCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGAT
GGGGGTTAACATCTCGACCTCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGA
GCTTGGATCTCAGGTTGATCTTCTTATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTT
TTAGTTGGTCATGATGATGGGGGCCTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTG
GAGATTCAAGAAAGGTTGAAGTGAAGGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGT
CATTCCTGCATTTGCTCGTATACTCCTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCCA
CTGTTACGTACTGAAATCACTCAGGTGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAA
CAACAGATGTTCTGAACCTCTACAAGGCTCCACTATTTGTTGAAGGCTGGGATGAAGCTCTCCA
TGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAAAAAGAGCAGCAGATTTACTAAGA
TCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAGT
CAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCT

Genomic sequence ATTCTGGCATACAAGAATGCATATCCTGGATGCTACAAGACTCCTCGATCTCCCACACCATACA
GTGGAAAATTTTATTCTAGGAGTGACAGTGAGACGAAGAGAAAATCTGTTGCTCACGACGATAG
GGATATTCCAATCAGTTTCCTTGCAGACGGTGATAGCATGTTCATTGCTTGCCAGGGGATCACT
GTGCATTACAAACTTTCCGATCCATCGAGTTGCATATCTTCAGCTACAGACACTTTTCCAGAAA
TCCATCATGATGTTATTTCAGCAAGCATTTCTCCTAGAAGACAGAGACATGATAGCCCACCATC
AGCCTCCACTAATACCCGTCGTCTTTTGAATAGGAGCTTCAGCCATCAATACCATCAGACATCG
CTATATGCACCATTGTTGGTAGAGCCAGTGACCTCTCCAACTTTGTCGGATGACACCCCTGTTC
TTAGTGTTGATGATGGCAGTGCTGATGTATGTTTGAAACCTATGGGATTTGATCTTGAGGCTGG
AGAACAGGGGAAATTTGCTGTTGTTTTGGTGCATGGGTTTGGAGGTGGGGTGTTCTCATGGAGA
CACGTTACAAATTTGCTTTCTCGTCAAGTGGGTTGCACTGTGCTGGCCTTCGATCGCCCTGGAT
GGGGGTTAACATCTCGACCTCGCAGAAAGGATTGGGAAGACAAAAATCTACCAAATCCATATGA
GCTTGGATCTCAGGTGATTCTTCTTACCATATACTAGATTGCGCACTGCCCAATAGCAGCAAGT
GCTTGCAGCACTTGCCCTAATGTTCTTTGCACTAGCTACTAGATATGTTGCAATATCCCATACT
CATTCCATGGAATTTGTTATAAGCATGACTGACTGAATGTAAATATGTTACTGCATGTGTTTTC
TCTTAGAACTATACTTATCTTTGGGATTATGTCTTCTATGTACCATAATTCTGTGTGACAACAG
CTTTTCCATTACAAATAGTTGAGTACAATCTTCTGAAGTTCTTTTTTTTCCTTAGGTACATCCT
ATCTTACAAATATTCATCTAAGGGAATGCTCTTCTACTGTAACAACTATTAATCTTTTAATTAA
TATTACTATATCCAGTTATGTTTGCAACATATTTTCCGGCAGCATTAACGCTATATTTCTTCGC
TGTACTTGGAAAACTCAGAACTTTAAGAACAACGCTTTGTATGCCTTCTGCAGGTTGATCTTCT
TATTTCATTTTGCTCGGACATGGGCTTACGCTCTGTGGTTTTAGTTGGTCATGATGATGGGGGC
CTGCTTGCCCTAAAAGCTGCAGAAAAGTTGCGAGCATCTGGAGATTCAAGAAAGGTAACTGCCT
TGTGACCTTCTGTTCATTTTTCTTTTGTGAACTTTAGTAGCTTATCAGACTGTTTGCTTGATGA
AAGTCTATCCTTCTGGTAATAATCATTTTAAATGCCTCCTTGTTTTTTCTTAGGTTGAAGTGAA
GGGAGTTGTGCTTATAGGTGTAAGCTTATCAAGAGAAGTCATTCCTGCATTTGCTCGTATACTC
CTGCATACCCCTCTAAGGAAAAAGCACATGGTACGGCCACTGTTACGTACTGAAATCACTCAGG
TGATCAATAGACGTGCATGGTTTGATGCTACCAAGTTAACAACAGATGTTCTGAACCTCTACAA
GGTACACACTTTTAATAATTTTCATTCCCTTCAGTGTGTTGTCAAACCATTAGTACGCAATCTA
TCTCTGGAAGAGTTTGGTCACTAAAAGCACATAGGGAGCGTTATATCATTTGCAAATAATCTAT
TTATCATTCCACCACATATTGTCTGAATGCAAGGAAAGTGGAACTTTTCTTGCATGTTGTTAGT
TATTTATTGTCTTCCTGTTCCTTGATGCTAAATTAAATGTTTTAACATGCATCCTTTCACTTAT
TCTGTGAACATGAACTACGAACTGACTTGAAATGGGTTTTTACATTTAGGCTCCACTATTTGTT
GAAGGCTGGGATGAAGCTCTCCATGAAGTAGGACGTCTTTCTTTCTCGACTGTCCTATCATCAA
AAAGAGCAGCAGATTTACTAAGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGA
GGATGCTCTTGTTTCTTCGAAGTCAACGCAAGTAATGGCTTCAAGGCTTGTAAATTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.371342657
Functional Information
Coding potential Y
Potential coding position 26108591-26110591(+)
26108624-26110579(-)
Potential amino acid sequence MFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLNRS
FSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHG
FGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFC
SDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTP
LRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLS
SKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTPYS
GKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFPEI
HHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVL
SVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGW
GLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRASG
DSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATKLT
TDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSSKS
TQVMASRLVNSILAYKNAYPGCYKTPRSPTPYSGKFYSRSDSETKRKSVAHDDRDIPISFLADG
DSMFIACQGITVHYKLSDPSSCISSATDTFPEIHHDVISASISPRRQRHDSPPSASTNTRRLLN
RSFSHQYHQTSLYAPLLVEPVTSPTLSDDTPVLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLV
HGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQVDLLIS
FCSDMGLRSVVLVGHDDGGLLALKAAEKLRASGDSRKVEVKGVVLIGVSLSREVIPAFARILLH
TPLRKKHMVRPLLRTEITQVINRRAWFDATKLTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTV
LSSKRAADLLRSVEDLPVLVVAGSEDALVSSKSTQVMASRLVNSILAYKNAYPGCYKTPRSPTP
YSGKFYSRSDSETKRKSVAHDDRDIPISFLADGDSMFIACQGITVHYKLSDPSSCISSATDTFP
EIHHDVISASISPRRQRHDSPPSASTNTRRLLNRSFSHQYHQTSLYAPLLVEPVTSPTLSDDTP
VLSVDDGSADVCLKPMGFDLEAGEQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRP
GWGLTSRPRRKDWEDKNLPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKAAEKLRA
SGDSRKVEVKGVVLIGVSLSREVIPAFARILLHTPLRKKHMVRPLLRTEITQVINRRAWFDATK
LTTDVLNLYKAPLFVEGWDEALHEVGRLSFSTVLSSKRAADLLRSVEDLPVLVVAGSEDALVSS
KSTQVMASRLVNS(+)
MHSDPLASNEHAITVCKETDWNIPIVVSNRFSLRLTVTPRIKFSTVWCGRSRSLVASRICILVC
QNRIYKP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017