Detail information of Solyc04g072670.2_circ_igg.1


General Information
CircRNA Name Solyc04g072670.2_circ_igg.1
ID in PlantcircBase sly_circ_001491
Alias SL3.0ch04:59718419|59723178
Organism Solanum lycopersicum
Position chr4: 59632654-59637413  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAAGGGTACTTACCAGTGCAAATAGTCACTTGGACACCAAAACTTTCAACCAAAAAGATGGT
GAAAACCCTAGTTCCAAAACAGAAACGAGAGAAACCcctgagtggctggattggacatatctgg
ctcagcatccatgtctgagagtttcagaccctcattatccaacttaatgctgtggtttttcaat
gcttcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAGTGGCTGGATTGGACATATCTGGCTCAGCATCCATGTCTGAGAGTTTCAGACCCTCATT
ATCCAACTTAATGCTGTGGTTTTTCAATGCTTCCTCTGATGTTACTGGGGTTACCTCCACATCA
TTTTCTTGTCCCCTAAGGTTGTCCTCAAGCACTCCCTCATAAGATGAAATTTTCATATCCTCAA
CATCCTGTCTAGTGCTACTGACTGGAATAGAACCATCCCAGACTTCAGATACCCCATCAGCAAC
ATAATCATCCTGAGAAGAATCAATAACCTTGTGTTCCTTATTAGATGCAATCTCATTTATAACA
CTAGTGCTACCAACCGGTGCCTCCAAACGGTCTGATTCTCCAGCAGCAGTATCTCCAGTTGCAA
CCTCATCCAAGACTTTATTCTGGTCTATTTCAACAAGAGCATTCTTGGTGCTAGCACTGGCATC
ACCATCAATTTCGTTAACTTCATTTTGGTGATGCTTCAGAACATCATCATTACCTCCAGTTGCA
ACCTCATCCATGACTTTGTTCTGGTCTATTCCAACAAGACAATTCTTGGTGGTGGCCCTAGCAA
CATCACTGTCAATACTGTTAAATTCATCTTGTTTTTGCTTCTGAACGTTATCAACCAATATATC
AGGATTGCTATTTGGTTGAGCTTCTTCAAGACCACATGTAGCATCAGTAATATGTTCAGAACCA
TGAGTGACTTCAATTGGGGGATGCTCCAGAACATCATCAACCAATTTAACAGGATCAGGCTCGG
GTTCAGTATCTTCAAGACCACTGGCAGGATCAATGTCACGATCATCATCCTTACTCTCTTTAAC
TGCAGCAGCTTCCATTTCTATGCAGATAGCTTCATTTAATCGTCTAACCAGATCATCCTTCAAA
CCTTTTGTCGTTAAGTTCCTCCTCTTAAGCTCATCCCTTAATTCTGCTACTTTCCATTTATTAA
TTGGACGATTATCAAGCACAGGGTAGTCCGACATCTTAGCCGCCAAGTGAAAAAAATCACTTAG
ACAAACCTGAAAGTCACATGGACATATAAAACTTGAAAAAAGAGACCTGAATGAATCTCAAAAT
CAAGAAAAGACAAAATCCTTATATGCAGATCTTTTCCTCTTTCTTTTTTTAACACTAGCAGAGA
TTAGTACTCACCTCTATAGAAATTTCAACTATACATGACGGGTTTCAAAAAAATGCATATTTGT
CGTGGACGAGACTTTCTTTATTGTGTTCTCTTTTTTCTTAAAAAAACAAAATATACTCAGACAT
TGCACACCAAGCCAGTGCTAAAATATATAATAGGAGTTTGAGCAATATTCAGTTGAAGTTGGAA
AAGAGTATTTGGAAGTTAAAGTTGTATTTGGATGAGTTTCTCCTTGAATACAGGACTATATATG
AAAGATTGGTGAGTAAAAAGCCATCATTTATAACTTGAAATACTCTTCATTAAATTCTTTAATA
AAATTTTGCCAAGATCTCAAATACTGATGACCAAGAAAAAAACTAATATAGTTCACGGCTCGGC
AATTGCCAATCTTAATAAGAAAAGGTATATACTCCTTGTAACACAAAAATACATATGGAACACT
AAGAATTTTCTTATTACTAACATCTTGTCAATTCAGGTAACTCCTAGTATCCATAAGACAACCG
TCTTAATGCTTACTTCCACACTTTGGAAGTTTCCTGTACCTTCTATCTATGTAATTGCTTCAGG
TGCTAGCACTGCCCCTGTTCTAGATAACACCTACATGATGTCAAAACATCAAACACTAGGGGCC
GTAGCTGTAAGACAACTCTTATAATGCAACAGAAAGTGGTTCCAATTTCTTCATATTCCTTGCA
CATGAACCACCATCATTATCGTTTCCGTCTCTCAAATTTTCAAATGTAGAAAATGCTTCATATG
TTAAATACGAAGTGAAAAATGCAACTCCTCGGCATCTTTGCATTCTCTTTCCTACTACCCAAAG
GCAAAAAAAGACTTTTCACTTACATAGACTTCGGAATACGAAGCTGCTAAGAGCACGAATATCT
TCACTCTCAACCTGTCCTCTAGATTGTCCAAGTCCGTATCCACAAATTGACTGGATGCTGCAAC
TATTTACATGCATCACAAATGAAGAGAGATTCCAGCCAATCTAACAACCCTACATCAGCCTTTT
TTTTCTCCAGAAACCATGCACCTCATTCTATGTGACCACCAGGTTACCGGTTAAAATGCATGAG
GCAGCCAACAGAAACAAAGATTTGGCTATTTAGCAATTTCTCTAAAAGATTTTCCAGTCATATT
TAATGTTACCCTCTTCATACCAGTTCTTCTATGGATTTCTATCATTCCCAAACATCAACCACTA
CTTATCAAGAATATGTCTATTCATAAAGGATTGTCAGTGAAATACTCTTTCCTTTTAGTCAGTC
CTATCTGATCTATGTGTTCCTCTCTACCATGCACTTGCTCTTTCAAAATGGTTTCCTCAAAACA
TTTAAGAACAATGCTGGTGCATTCTTTCGTACATGTCCTAATCCCTTAATAGTTCTTTTCATAA
AGCTCACATTTCATAATCACAATGGCTGCTACAATACACTCAAGAAAAGTATGGTGTACTCTTT
CATACATGTACCAATCCTTTAGAGTACTCGTTCAGTCACAATTTAGAATTCTCAGTTAGAAAAT
AGCTTTAGGGCTAGTTAAAACATAGCCAATTTTTCACTTCAACTTGAAGTGGCTGGTTCTAACA
ACTTACCAAGTAAGAAAATAATATTTCCCTCATAAGATTTCACCATTTTTCCAATTGAAATGCA
TGTCCAGACATCATTTCAATTTCCAAATACCCTTTCTTATCATACCAGCATGACCCACTATTTG
TTTTCGATCACAGAATCAAGGAGGCAACCTGGTTCTACTTGAGTAAACCCGTGCTCCTCCAAGG
AGAAAGTTTGCTTTACCCAACTCCATTTTTGATACAAGGCAGTTCATCCCGATAAAATAGAAGG
ACATCCGGTGTTGAAGCTCCACTCTCCTTTGGATATCAGGAAGGAAAGGGTGTTCTATAGTTCC
TGAACCAGAACGCATGCGGAGTGGGCGCAACCTCGAGCTCGGAAATATGCAGTTGTGCTTACAG
GCTTGGAACTCTGATGAATAAATAAGAATTTCGGGCTAAGGCTTAAGAATTAACATCTAGGTGC
TTGCCTAGTTCACGGTAAGAACGTTGACTTTGCGACCGCCCGAGGTTACGACCTTCTTTGCTTG
AAGCTCAGGTCACATATGAAATTGAAGCAAACTTAACTTCAAATATCATCAAAATTAATGTCCA
CACGCCAACTATAACGATATATCCAGTATAACCCCACAAGTGGGGTGTGGGGATGGTAAGATGC
ACACACGCCAACTAAATCATCAAGTTCTCAACATCATCTCAGGTAGATTTAAACCCATGATAAA
TAGAACAACCTTCAGAGATTTGGTCTTGCACCTCTATATAGTAAAAATTTCTATCAGATATTGT
TGGTTAGATCTATCCTATGCCTTCCTAATACTTCTAGACCTTACTATTAACCACTCATATGGTG
ATGCCCAATCAAACACAATCTTCATCCCCTATTTATCTTTCCATTCCAACACAAAATAAAGACC
ACCCTGCAAGATGAAATCTAAACTTGACATGCATAGATAATACCGGTTACATGCAAAGAAGTTG
TTTTTTATGGGAAAAGACTCCTCGCAAATATTTATACTAATGGACATACTGAACCTCGCAAAAA
ATATCAAAGCTAGGAACTTTTTGTGATTATACCGGGTATGTCATTGCTGTGATATGTTAATTGT
TGCTTCTTTTTTAATCATTCTCTATGTTTGTTGTATGTTGTTTCATCTTTTATGTTAGCTATCG
ACATTTTTCAATATATTTTTTTGGATAATTATGGTGTCTGGATATTCCACAGGATAACCTACCA
CCACTTCTAGGTAACTCTATCCACCAAGGCTAGAACATATGGGCAGAAATCACCTAGTGTCTTA
TCCCTACTGGGATTGGAACCTGAGACCTCATGGTGCTCAACCCACTTCATTGACCATTGGACAA
CACCCTTGCTGCAACATTTTTCAATATTATATTCAGCTGAGATCCTCATATTTAAATAATAGCA
CAAGCTTCTCTCATGCAGAGAGAGAGTGTTAAGTGCTTTCCGCGCCTATATAAGTGGTAGCCAA
ATATATAGGGCTAAGAAGAAAGATAAGGCAATATAAGGTTTAATCCGTCAAAGCATTGCTATTC
ACTGAACATATGCACTCAAAAAATGTAAATCCAACATAACGTATAGGCATCTTAAGAAGACAAC
TACTTGGTGGAACTTACTAGAGCTATGAACAAAATAATCCATAAAGAAACCATAATGCCAATCA
CAAGTCCAATATAAAGTAGCTAGATCTCAGTCTTCCAAATAAAAAAATTGCAAGAGAACAGTAT
CTTTAACTTTAAAACTCAAATATATTAATCCCCATGTCTTTCTTACTTCTAATTTTAACCCAAT
TGCAAAACTTTAAACTAAAAAAAAAAAAAAATCTTAGCTCCTACCCAGCCGCCGCCCCAACGTT
TCAACATTTTCTATTCAAGAAAGTGAAAATATAAAAAATTCAGACAATTAATGAAAAGGGTACT
TACCAGTGCAAATAGTCACTTGGACACCAAAACTTTCAACCAAAAAGATGGTGAAAACCCTAGT
TCCAAAACAGAAACGAGAGAAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.138553076
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020