Detail information of AT2G33340_circ_g.3


General Information
CircRNA Name AT2G33340_circ_g.3
ID in PlantcircBase ath_circ_016253
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14127844-14129163  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G33340
Parent gene annotation Pre-mRNA-processing factor 19 homolog 2
Parent gene strand -
Alternative splicing AT2G33340_circ_g.2 AT2G33340_circ_g.4 AT2G33340_circ_g.5 AT2G33340_circ_g.6 AT2G33340_circ_g.7
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33340.3:5
AT2G33340.2:5
AT2G33340.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCGAACAAATGCCTGGTTTGTTGGTCTTGTGAAGTGGGTGGCTTGATAGCTGAGTGAACCT
CTCCAAAGTATCTATTGACGCCAATGTTTGAGGAATctgtgcaaggcatgagccagaggacaga
tcgtagaagcaccatgtaccatcaagagatgccgagacaaagtatttatttgtgggatgcacag
ttacagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGCAAGGCATGAGCCAGAGGACAGATCGTAGAAGCACCATGTACCATCAAGAGATGCCGAG
ACAAAGTATTTATTTGTGGGATGCACAGTTACAGCTCGCACCTGAATAAAGCATCATTAACTAA
AGTTACACAAAAAGTATATGAATTAAAAGAACATGGAACGGACTGTAAGAGTTCCTCAAATTCA
TCCTTACCTCCGCAGAATGATCATTCAATGTATACCCACAAGCATAATTCCCATCCCCAGGATT
CCGCCAGATACGGACTGTCTGCAGGTAAGTCACTAATTTAGTAATAAAAAGATAACTATCGAAC
AATTGGTGATGTACATCCTCTGTGAAATCGAACAGAGCATCCAACAAATTACAGAGACTTCTGG
TGTGAGTGATCAAAATGTGTTTTATAACTCGCAGCAAACAAAGTTTTCAAAGATAGCATCATGA
CATCTACAGAAAAAGATTCAATGGCTACTAGTCATCTTTTCACAATACAAATAAACAAATGCAT
CTGCCGGCTACTACTTTTCAAAACGAAGGCAATACACAATGTGGGATTACAATTTCCTATAGAA
CTAATACCAAGCACTATTCATAAAATATGACATATGAAATTACCTTGTCAGCAGAAGCAGTCAA
AACAAGATCAGAGTCGCCTACAAATTTTACGCTTGTAACCTACAAAAGAATCAACACATATCAA
GCATGGAGCTACATGAAACAAATTCAAACAAAAATCTAAGGCAAAAAGTTAAAAACCTTCTTCG
AGTGACCAGTCAGTGTTGACAAGATTTGTCCAGAAGGGCGATCAAAGAGAACAGCAGTTGCATC
AACTCCTCCAGTAGCAATGACATCCTGGTCACCGAATTAAGAAGAAATATAGTTCTGATGTAAA
TTTTTGCACACCAAAACTTAGCATAATATAAGATCAAAGAAATGCAAAGAATCCCTGGTCGTGG
TCGTAATACAAACTATCACACACAGCATATAGGTATGTAATAGGCAAATAAAAATATTATGCAA
AAAAGACATAACAATGATATGATCATTCCCCAACCAAGGACTCAAGGCTATATTCAAATAATTT
ATACATAGAAGATTAGAAGTTTGCCAGTCGGTTATCACATGCTATGAAGAGGCTTTCAGAAACA
GAGGAAAATAAGAATAAGGGGATGTGATTAAAAAACCATCAGATGAGGGACCTTAGAATGTAGA
ATGTCCATCGAACAAATGCCTGGTTTGTTGGTCTTGTGAAGTGGGTGGCTTGATAGCTGAGTGA
ACCTCTCCAAAGTATCTATTGACGCCAATGTTTGAGGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.122415865
Functional Information
Coding potential Y
Potential coding position 14129068-14127846(-)
Potential amino acid sequence MDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW
RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQIPQTLASID
TLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVT
SVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGT
WCFYDLSSGSCLAQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATGGVDAT
AVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHS
AEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQIPQTLASIDTLERFTQLSSHPLHKTNK
PGICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADK
TVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017