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circRNA ID
Zm00001d045553_circ_g.1
Alias
zma_circ_006423, Zm09circ00019
Organism
Zea mays
Position
chr9: 26602772-26602955  JBrowse»
Reference genome
AGPv4.38
Type  
e-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d045553
Parent gene annotation
Heat shock protein binding protein
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
CTCGCCGAGATGCAGCTCCAGCTCGTCAAGAAGCGGAGGGGCGCAGAGGTTCCGGAGACCTCTT
CCCGAGACTTGGTGGTGGCGGAGGAGGAtcacacctccgccggaggacgaacccgttgcccgta
ggcctgcgcctcagcggctgccaccggccaagaggccggagaagatggagatgacg
Support reads
NA
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GG-GG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TCACACCTCCGCCGGAGGACGAACCCGTTGCCCGTAGGCCTGCGCCTCAGCGGCTGCCACCGGC
CAAGAGGCCGGAGAAGATGGAGATGACGCTCGCCGAGATGCAGCTCCAGCTCGTCAAGAAGCGG
AGGGGCGCAGAGGTTCCGGAGACCTCTTCCCGAGACTTGGTGGTGGCGGAGGAGGA
Number of exons covered
Zm00001d045553_T001:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
26602773-26602771(+)
Potential amino acid sequence
MEMTLAEMQLQLVKKRRGAEVPETSSRDLVVAEEDHTSAGGRTRCP*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Han et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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