Plant Circular RNA Database

Detail information of Os05g0372100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0372100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_027662
					
						Alias
						Os05circ08871/Os_ciR1774
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 17926331-17927947  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os05g0372100						
					
						Parent gene annotation
						
							Similar to protein kinase family protein. (Os05t0372100-01);Simi
lar to Receptor protein kinase-like protein. (Os05t0372100-02);H
ypothetical protein. (Os05t0372100-03);Similar to protein kinase
 family protein. (Os05t0372100-04);Similar to protein kinase fam
ily protein. (Os05t0372100-05)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0372100_circ_g.2 						
					
						Support reads
						2/8/3
					
						Tissues
						leaf and panicle/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0372100-01:3
Os05t0372100-04:3
Os05t0372100-05:3
Os05t0372100-02:4

General Information
CircRNA Name	Os05g0372100_circ_g.1
ID in PlantcircBase	osa_circ_027662
Alias	Os05circ08871/Os_ciR1774
Organism	Oryza sativa
Position	chr5: 17926331-17927947 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os05g0372100
Parent gene annotation	Similar to protein kinase family protein. (Os05t0372100-01);Simi lar to Receptor protein kinase-like protein. (Os05t0372100-02);H ypothetical protein. (Os05t0372100-03);Similar to protein kinase family protein. (Os05t0372100-04);Similar to protein kinase fam ily protein. (Os05t0372100-05)
Parent gene strand	+
Alternative splicing	Os05g0372100_circ_g.2
Support reads	2/8/3
Tissues	leaf and panicle/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0372100-01:3 Os05t0372100-04:3 Os05t0372100-05:3 Os05t0372100-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAAC
ACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGataaatcaaaatcacagggtggattgga
ctctaggaaggatgcattcatcccaagggatgcgaatggtcaacctattgctgcacacactttc
acttttcg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 276
Transcript exons: 17926331-17926478,17927820-17927947
ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA
TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC
AGACAAGATTGTCTATTGGGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTT
GGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAG
AGCAGAACCTAGTGGCATGG
Transcript length: 665
Transcript exons: 17926331-17926527,17926730-17926919,17927556-17927699,17
927814-17927947
ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA
TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC
AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG
GGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGT
TGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCT
GATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGC
ATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGC
AGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAG
TCATCGAACATTCTTCTTGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATA
GTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACT
TGGAGAGCAGAACCTAGTGGCATGG
Transcript length: 779
Transcript exons: 17926331-17926527,17926730-17926919,17927556-17927947
ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA
TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC
AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG
GGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGT
TGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCT
GATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGC
ATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGC
AGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAG
TCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAAC
TTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGC
CCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTG
TTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACC
TAGTGGCATGG
						
					

						Genomic sequence
						
							ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA
TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC
AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG
GGCAGGTTTGTGTTCTGAAATATGTTTTTCGTGGTTGGGGATTTTTTGAATTCTCTATGGTTAG
CTACTGTGCACTTTTGGTAATTTGCGTACTAAAACACCACATTATGGTTACTGCATTTCTTTTA
ACCCCCTATGTGATCTGTGGAGCATTAGAGGAGACATGTTTCCTTAAAGTCTTGATCGATGAGC
TTACCAAATATGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAG
AGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGG
ATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAG
GATCATTTGCATGGTAAATTTGCTACTCTACTACACTCATGAACTCCTATTGTATTTGTATGCC
TATGTCCTGTATATTCAAAGACACATGTGGCATTATACATGCAGTATCTGTCAACTCAGCTTGC
AAGTACCTACATGTGTTTATTCTATCGTTGTGAGCTCGTTATAACTCACACTTCCAACAGTATA
AAGTTTCTTCCAGAAAAAGGAAAAAAAACAACAGTTTTGTGGGTTATCCTGTATTAACTCACAA
TTAATAAATACTAGTTAAAATAATTTGCGTCGTGAAAGTGGTTTACCAAACAGAAACCTTACAT
TGTTGTTACTTCAACTTTATTGTCTCCCACATATCCTGTCTCAAGTTTATATATCTAGAATACC
CTATGATGTAATTATGCTCAGATACTTGTTCCATTGCTAAATCATGAAAACAAAACATTGTGTC
TATAATCTGGACTTGATTTACTTAGCATTATGGTTTTTCGAAACCAACAGACTCTTATGTTTCC
ATAAAAGTTGGTAATATGCAACAACGATGTCTGCATCAGACTCTTAAGCGCATTGTTTGTTCAT
AAGACGTATTTAGTTTGTTTAAATTAATTTGCATGATTCATAAATGGCAACGTTTTGTACTTTT
GTGTGTTAGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGC
TGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGAT
TTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGG
CAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTA
CTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGT
GTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGC
AGAACCTAGTGGCATGG
						
					

			
		

Sequences
Splice junction sequence	TGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAAC ACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGataaatcaaaatcacagggtggattgga ctctaggaaggatgcattcatcccaagggatgcgaatggtcaacctattgctgcacacactttc acttttcg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 276 Transcript exons: 17926331-17926478,17927820-17927947 ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC AGACAAGATTGTCTATTGGGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTT GGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAG AGCAGAACCTAGTGGCATGG Transcript length: 665 Transcript exons: 17926331-17926527,17926730-17926919,17927556-17927699,17 927814-17927947 ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG GGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGT TGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCT GATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGC ATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGC AGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAG TCATCGAACATTCTTCTTGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATA GTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACT TGGAGAGCAGAACCTAGTGGCATGG Transcript length: 779 Transcript exons: 17926331-17926527,17926730-17926919,17927556-17927947 ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG GGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGT TGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCT GATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGC ATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGC AGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAG TCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAAC TTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGC CCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTG TTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACC TAGTGGCATGG
Genomic sequence	ATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAA TGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTC AGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATG GGCAGGTTTGTGTTCTGAAATATGTTTTTCGTGGTTGGGGATTTTTTGAATTCTCTATGGTTAG CTACTGTGCACTTTTGGTAATTTGCGTACTAAAACACCACATTATGGTTACTGCATTTCTTTTA ACCCCCTATGTGATCTGTGGAGCATTAGAGGAGACATGTTTCCTTAAAGTCTTGATCGATGAGC TTACCAAATATGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAG AGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGG ATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAG GATCATTTGCATGGTAAATTTGCTACTCTACTACACTCATGAACTCCTATTGTATTTGTATGCC TATGTCCTGTATATTCAAAGACACATGTGGCATTATACATGCAGTATCTGTCAACTCAGCTTGC AAGTACCTACATGTGTTTATTCTATCGTTGTGAGCTCGTTATAACTCACACTTCCAACAGTATA AAGTTTCTTCCAGAAAAAGGAAAAAAAACAACAGTTTTGTGGGTTATCCTGTATTAACTCACAA TTAATAAATACTAGTTAAAATAATTTGCGTCGTGAAAGTGGTTTACCAAACAGAAACCTTACAT TGTTGTTACTTCAACTTTATTGTCTCCCACATATCCTGTCTCAAGTTTATATATCTAGAATACC CTATGATGTAATTATGCTCAGATACTTGTTCCATTGCTAAATCATGAAAACAAAACATTGTGTC TATAATCTGGACTTGATTTACTTAGCATTATGGTTTTTCGAAACCAACAGACTCTTATGTTTCC ATAAAAGTTGGTAATATGCAACAACGATGTCTGCATCAGACTCTTAAGCGCATTGTTTGTTCAT AAGACGTATTTAGTTTGTTTAAATTAATTTGCATGATTCATAAATGGCAACGTTTTGTACTTTT GTGTGTTAGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGC TGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGAT TTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGG CAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTA CTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGT GTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGC AGAACCTAGTGGCATGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006200* osi_circ_015384 						
					
						PMCS
						0.444410802

Conservation Information
Conserved circRNAs	osi_circ_006200* osi_circ_015384
PMCS	0.444410802

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17927945-17926739(+)
17926800-17926739(+)
17926381-17927888(-)
						
						Potential amino acid sequence
						
							MDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLE
NGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDH
LHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLA
KLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQ
NLVAWINQNHRVDWTLGRMHSSQGMRMVNLLLHTLSLFVNLLLPLRTSDKIVYWGREVLAAYIK
DTWRMGRLLQ*(+)
MLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKG
LEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEY
AMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWINQNHRVDWTLGRMHSSQGMR
MVNLLLHTLSLFVNLLLPLRTSDKIVYWGREVLAAYIKDTWRMGRLLQ*(+)
MNASFLESNPPCDFDLSMPLGSALQVVWCCRLLCGQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17927945-17926739(+) 17926800-17926739(+) 17926381-17927888(-)
Potential amino acid sequence	MDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLE NGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDH LHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLA KLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQ NLVAWINQNHRVDWTLGRMHSSQGMRMVNLLLHTLSLFVNLLLPLRTSDKIVYWGREVLAAYIK DTWRMGRLLQ(+) MLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKG LEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEY AMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWINQNHRVDWTLGRMHSSQGMR MVNLLLHTLSLFVNLLLPLRTSDKIVYWGREVLAAYIKDTWRMGRLLQ(+) MNASFLESNPPCDFDLSMPLGSALQVVWCCRLLCGQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0372100_circ_g.1

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