Detail information of AT4G01050_circ_g.8


General Information
CircRNA Name AT4G01050_circ_g.8
ID in PlantcircBase ath_circ_029151
Alias 4:457347-457726
Organism Arabidpsis thaliana
Position chr4: 457347-457726  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT4G01050
Parent gene annotation thylakoid rhodanese-like
Parent gene strand +
Alternative splicing AT4G01050_circ_g.1 AT4G01050_circ_g.2 AT4G01050_circ_g.3 AT4G01050_circ_g.4 AT4G01050_circ_g.5 AT4G01050_circ_g.6 AT4G01050_circ_g.7 AT4G01050_circ_g.9 AT4G01050_circ_g.10 AT4G01050_circ_g.11 AT4G01050_circ_g.12 AT4G01050_circ_g.13 AT4G01050_circ_g.14 AT4G01050_circ_g.15 AT4G01050_circ_g.16 AT4G01050_circ_g.17
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT4G01050.2:3
AT4G01050.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATAACAGGAAATAGGAAAGGCTCTTCTTCCTCAATCAACAAGCAACAAAGCTCTCCCAGCAC
CAGCAACAGTAACAGCAGAAGCAGAATCAGCTACAGttgttcaacttgcaggcaagaaacttct
atttgctgaggcaagttcttcccatcttttcattcatcaagattcagtttgaatgtatttatcg
caattggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTTCAACTTGCAGGCAAGAAACTTCTATTTGCTGAGGCAAGTTCTTCCCATCTTTTCATTCA
TCAAGATTCAGTTTGAATGTATTTATCGCAATTGGTGATGTTTTGATGGTTACTTTTCTATACT
CTCTACAGGACCGAAAGCAAACTCTAAAACAGGTGGATGAGTTCTTGAACACAAAGGTTGCCCC
TAAAGAACTTGTTGATGAGTTAAAGGTAACTAATTTAGATACATATCTCCATTAGTAATAAAAC
CCTTTATAGAAATAACTCTACGTGGAATAACAGGAAATAGGAAAGGCTCTTCTTCCTCAATCAA
CAAGCAACAAAGCTCTCCCAGCACCAGCAACAGTAACAGCAGAAGCAGAATCAGCTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.198131448
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020