Detail information of BGIOSGA032597_circ_g.2


General Information
CircRNA Name BGIOSGA032597_circ_g.2
ID in PlantcircBase osi_circ_002754
Alias 10:4153562|4154206
Organism Oryza sativa ssp. indica
Position chr10: 4153562-4154206  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032597
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032597_circ_g.2 BGIOSGA032597_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA032597-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCCTGTTCTTAGTCTTCCGTTTATTGCCATATGCTGGTACAATTCTGCATCCAAGAACAGC
AAGGTGAATGATGCCACTGTCACCAGATTAATACAGcatggtgtataataaagttacagcagaa
aaatcagagagagctgaaacttgacaaaggaatacatgctgctgactctgtttcagtaacacaa
tggagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGTGTATAATAAAGTTACAGCAGAAAAATCAGAGAGAGCTGAAACTTGACAAAGGAATACA
TGCTGCTGACTCTGTTTCAGTAACACAATGGAGCTTTCTGGCAGTTTGTCTATTTTATCTGACG
GGTCATTGGTAATTTCTTTGCTGTGTGGATGTTACTGACCTTTATCTTTTAGTTAGAATTTATC
TTTCTGTTAATAATGCATTTTTAGTATGCAATTTGTTTCCTAGTCTGGAATAAAATGCATGTAC
AATTTGTATTTTCTGTATCTGATGTGATTTAATTCATATTTTTAGATGGAGTTGTTGAAAATAC
ATTGTTGATCAAAAATTATGTTTCAGGTGTACCTTTGATGGCCTCCGTTATGGTGCTGCATTCA
TTGGGTGAGTGTAATCATGTTCCAAATATAAATGCTGAAAGGCATCTCTCATGATGCACACGGT
TTACTTATCACAACAATTAATTTTACAGGTTTGATCATTTCCATATTATCCGACAAGGCCTTCT
TCTTTCCATTGATACTTTTGGCGTTTCTCACATACTGCCTGTTCTTAGTCTTCCGTTTATTGCC
ATATGCTGGTACAATTCTGCATCCAAGAACAGCAAGGTGAATGATGCCACTGTCACCAGATTAA
TACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 4153944-4154200(-)
Potential amino acid sequence MQHHNGGHQRYTNDPSDKIDKLPESSIVLLKQSQQHVFLCQVSALSDFSAVTLLYTMLY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021