Detail information of BGIOSGA033850_circ_g.2


General Information
CircRNA Name BGIOSGA033850_circ_g.2
ID in PlantcircBase osi_circ_003180
Alias 11:16769489|16770260
Organism Oryza sativa ssp. indica
Position chr11: 16769489-16770260  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033850
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033850_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033850-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTGGAACTTTGTGTTTGTACCTGTAGTACACCCATTAACCGAATTTTGCGAATATCGACAC
CATAGGTAAGTTCATGGATGCCATGGAAGAAGCCACctctgttttcagataaacaggatgtgca
tagagatgctggattccaagaacagaccgatcaatcatgccaacagcattgcaacctggccctg
tatctcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGTTTTCAGATAAACAGGATGTGCATAGAGATGCTGGATTCCAAGAACAGACCGATCAATC
ATGCCAACAGCATTGCAACCTGGCCCTGTATCTCCTTTCACTCCACATTTCACCTGCAACCACC
CATCCAAAAGCAACATTTTATAAAAACAATCAAAAGTGGATTTCTCCATTTCAGATAACAACAA
ACAAAAGAAACTAAAACATAGGAGAGTTTCTTAAGAAATTAAAATATAGGAGAATTTCTTAAGA
AAAAAAAACTGACCAGAAAATGCTTCACAGTTGAGTCCAGAGATGTGACCTCATACTCCCAATC
TGGCACGTGCAAACCATACAAAATCACCAGGTACGTGACCACCAGAACCAAACCCACGAACCTT
TGCAAAGCAAGGAAAAGGACAACATGTGATGTAATGCATGAGAAATTTCTTAAGTTTAAGATCA
GTTAACAATAGCTGATAAATTAGCAAGTTGTGTAAAGTGTGCTCACATCTGATGATGGTATCTT
GTTATTAACATAGAGCCAGAGCCAATGTCACCGCCACTACTAACCCTCCTTAGCCAGATTTCGC
AAAGCGCCACCACTAAGTAGGCTATTGCAATCCTCTGCGTCAAGTGTGTAAAATATCATGTGTA
AAAAGCTCTTATATATTGCTCACAGTAGGGACTGTTTGGAACTTTGTGTTTGTACCTGTAGTAC
ACCCATTAACCGAATTTTGCGAATATCGACACCATAGGTAAGTTCATGGATGCCATGGAAGAAG
CCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 16770200-16770200(-)
16770243-16769789(+)
Potential amino acid sequence MGVLQRIAIAYLVVALCEIWLRRVSSGGDIGSGSMLITRYHHQMFVGLVLVVTYLVILYGLHVP
DWEYEVTSLDSTVKHFLVKCGVKGDTGPGCNAVGMIDRSVLGIQHLYAHPVYLKTEVASSMASM
NLPMVSIFAKFG*(-)
MPWKKPPLFSDKQDVHRDAGFQEQTDQSCQQHCNLALYLLSLHISPENASQLSPEM*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021