Detail information of BGIOSGA034346_circ_g.2


General Information
CircRNA Name BGIOSGA034346_circ_g.2
ID in PlantcircBase osi_circ_009366
Alias Chr11:5176336_5177003(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4758314-4758981  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA034346
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034346_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034346-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGACTCTTGAAATACTCACATAAAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGG
CGTTTCTTTAGGAGCTTGAGTGTCTCCTTGGCTTGTccctgagttcttggtaagcagcgtgata
ctggggatatctgccagatgcacctccaaaagccacttgccatgtgtcaatcaaactcaatatt
ttctcccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCTGAGTTCTTGGTAAGCAGCGTGATACTGGGGATATCTGCCAGATGCACCTCCAAAAGCCAC
TTGCCATGTGTCAATCAAACTCAATATTTTCTCCCGAACATTTAAATCTGGCTGAAATCATAAA
TTGACAATCAAATACAGAAGCATAAGAATGTAGGAACTAAGAAAGCAGTAGTTGGCCACTGAAT
GTGAGCATAATCCTCACCTTTTTCTTTACTATCTTAACCATTTCACTTAATATGTCTCGCTCAA
TGATTTGCTGGTAAACAACATCCCCACAGTTTTTGCTTAGAGTCTCTAGCACCTGAAAAGGAAG
ACAAACAAACAGAACAACTCAGCATATTAAACAAGACATGACTGTGCACATAGAAACTATGCTC
TTTGTTTCCTAAATCTGGAAGAAGCACAAGAAGTTTCCAAAATCTGGAAGAAGAACAAGAAATA
ACTTCTAAATTTGTGTAGCTAGTGAAGACAGGTGAATTCTTAAATTTAGGAATTAATCGACCTA
AAACTCACATTGTTAAAACAAAAAATCAGAAGATAACACACTGAGTATCAATATGCAAGGACTC
TTGAAATACTCACATAAAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGGCGTTTCTT
TAGGAGCTTGAGTGTCTCCTTGGCTTGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021