Detail information of BGIOSGA033172_circ_g.7


General Information
CircRNA Name BGIOSGA033172_circ_g.7
ID in PlantcircBase osi_circ_008548
Alias Chr10:20389053_20389898(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17417001-17417846  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-GA
Number of exons covered BGIOSGA033172-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACCCACTTAGTGTTTCGGTTGCAATTCTTCACCAGTTTAACATTTTGCCTGAGATGTATCAA
GTTGGGTACACAAAATTGTTCTTTCGAACTGGCCAGggagaaagaggcaaggcttttgcagtcc
gtcactatgcaggagaggttgggaattgacacttatccacagctgtgtacatcatgtttctttt
atcatgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGAAAGAGGCAAGGCTTTTGCAGTCCGTCACTATGCAGGAGAGGTTGGGAATTGACACTTAT
CCACAGCTGTGTACATCATGTTTCTTTTATCATGTGTTAACTTCATTTATCTTCTTGATAATCA
GGTGGCTTATGACACGTCAGGTTTTCTAGAGAAGAATAGAGATTTATTGCACATGGACTCAATT
CAGTTCCTTGCCAAATGCAAATCCTCACTACCACAAATGTTTGCATCCAAAATGCTTTCTCAAT
CTGATAATCCGTTACCTGTTCCATATAGAAATAGTGCTGCTGACTCACAGAAGTTAAGTGTTGC
GATGAAGTTTAAGGTAATTTTTTTTGGCCCCAAATAACAATTTGCTAGATCATGAATGAAGTAG
ATTAGTTTTATTGACAGTGTCTGTCCAATTTTTTTTAAAGGGACAATTGTTCCAACTTATGCAA
AGACTCGAAAGTACAACACCACACTTTATACGTTGTATTAAGCCAAACAATTTGCAACTCCCTG
CAATTTATGAACAAGGACTTGTGCTTCAACAACTCAAATGTTGTGGGGTTCTTGAGGTTGTCCG
AATTTCAAGATCTGGATATCCAACAAGAATGACTCATCAGAAATTTGCTCGACGGTAAATAAAA
TATTTGAACAGTAGTATTGCATTTCTAGTTACCTTTTATTTTGCAATACTGTAACAGTTCATTT
TATCAGGTATGGCTTTCTTCTTCTTGAGGATGTCGCATCTCAAGACCCACTTAGTGTTTCGGTT
GCAATTCTTCACCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGGTACACAAAATTGTTCT
TTCGAACTGGCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021