Detail information of Os03g0243300_circ_g.4


General Information
CircRNA Name Os03g0243300_circ_g.4
ID in PlantcircBase osa_circ_018818
Alias NA
Organism Oryza sativa
Position chr3: 7581196-7582997  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os03g0243300
Parent gene annotation Similar to 26S proteasome non-ATPase regulatory subunit 4 (26S p
roteasome regulatory subunit S5A) (Multiubiquitin chain binding
protein). (Os03t0243300-01)
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0243300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATCCGCTGTTGCTGCCTCTTATTCTGGCGATGCTTCAGAGCCAGCTGAGCAACCTGAATTG
CTGCAGCCAAATTTGCTTCAGCACCAACTTCAAGTCctagtgccaagtcctggtcatctacagc
agcctctgccatagcagcatcagccgctgcagcccctgaagaaccctcctccattgacattgca
agagcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAGTGCCAAGTCCTGGTCATCTACAGCAGCCTCTGCCATAGCAGCATCAGCCGCTGCAGCCCC
TGAAGAACCCTCCTCCATTGACATTGCAAGAGCCTGTTGTAGTAGCTGAGCATCATCATCTTCC
TGTGATCACATCACATCTATATTAGCCAACTCTTGTCCATCTAAACAGCATTCTCAACTCAGAT
AAATCAATATCTGATGCATACTAATTGAAATGAAAAAAAGTAATGCAATCATGTGTTTTAATTG
AAATGGTTCCTTGCAAACTTCAATTATCAAAGATCAAGGTAGGTGGGATGAGATGACTTGTTTG
AATTAAATCAGAAATACTGACAACAATATTTAGGCAAAAAAATATGTTCGAAGCAAAATAAAGA
GTGGATGAAACAATTAGCACATACATATGGGCTATCAGCAGAATCATGACTAAGCAGCACTAAG
TGATGATTTCTGAATGAATTGATTCTACTGATCAAGGATCACAAAGTTACTCTGTAGTCATATG
GGGTTCATTTCATTTTACCACAAAGTGAAAAGTCTTTATCAATGAACTTCACAAAATTGTTTGA
ATTTTATTTATTTTTTTTACGTGCTAACAAGAGATGCACCAGCAAAACAAAATAGTTGTTGCTT
TCTCTTCAGTGGGCAAATATTGATCGCAACCTTGTTATATAGTTATCACATCTCGACAAAGAAA
GAAATGGCCAAAAAGCCTACATCAGCAACAATATTGTTCAAGCAGTACTAGAATATTGCTACTA
CAGAGCTTCTTCTGTAAACCCCAACATGAAAATAACTGTTATGCTTGCATTGACAAGCAATGCT
GCCAGGTAACTTTTTGTTTATATAAAGCGTGGTCCAGATTGAATGCCATTGGTAATTTTGTAAA
TTGCTATACAAGTCCAATGGTGTGTGTTGATGAAGTTTAAAATGATTTAGATAGCTATATGACA
TAATACCCCAATTGTAGAACTTTTCACAATGTGATGATTAACTGTAGGATAACGACAATACCTT
CGGCTGATCTTTTTTATCATCAGCAGCATTTGAGGCAGGTTCCGCTTCTGCCATAACAGAATCA
GCGTTTGAGCTTGAGGCATGGTCCTTATTTTCAGCACCAGAAGATTCTTCTGCGGCCTTCTTCG
CAATAGCCTCTTGCCTTGCTCGCTCTTCTTCCATGGACAACCGCAGGGCGAGTGCCAATTCTGG
ATCTACATTTGGGTCCACATCAAATTCAAATCCAGCTGCACCAGTAGCTGCTGCTGCTGCTGCA
GAAGCAGCAAAACCGCTTCCACCTTCTTCACCAGTGAAGATAGGAGTACTGTGAAAAGAGGGAT
ATTAATTTGTCAGCAGAAATACATTAAAACAACAACCTAGAGCCCGAACAAATTGATACATTAT
TACCTTATAAGCACATCGGAAAGGGCATTTTCACCGGGAGGGACATGAACGATGTGGCTGCTAT
CACTACTGTTCACAGCAGAGATTAGCGCTTCCAGTTTCTCAGGCTTATCATCATCGGTTTCACC
AAAGTCAACGATGTCAAGAGCCACATTATTCTTCTTCAGCTTTTTCCCGATTGTTTCCAAAACT
TTCTTGTCGTATTTCACAGGGCTGAAAGATTAGGCCAGCATCATCAACCGCGACTCATATAAAA
AGGTACCATACAAGTTATCATACCTTCCAATAAAAGCTATAATCCGCTGTTGCTGCCTCTTATT
CTGGCGATGCTTCAGAGCCAGCTGAGCAACCTGAATTGCTGCAGCCAAATTTGCTTCAGCACCA
ACTTCAAGTC
Conservation Information
Conserved circRNAs osi_circ_014125
PMCS 0.160097868
Functional Information
Coding potential Y
Potential coding position 7582931-7581196(+)
7582383-7581198(-)
Potential amino acid sequence MLQSQLSNLNCCSQICFSTNFKS*(+)
MEEERARQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQ
QALAMSMEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQ
RIIAFIGSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVH
VPPGENALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEE
ERARQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQAL
AMSMEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRII
AFIGSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVHVPP
GENALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEEERA
RQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQALAMS
MEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRIIAFI
GSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVHVPPGEN
ALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEEERARQE
AIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQALAMSMEE
GSSGAAAADAAMAEAAVDDQDLAL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017