Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0243300_circ_g.4 |
ID in PlantcircBase | osa_circ_018818 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 7581196-7582997 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | Os03g0243300 |
Parent gene annotation |
Similar to 26S proteasome non-ATPase regulatory subunit 4 (26S p roteasome regulatory subunit S5A) (Multiubiquitin chain binding protein). (Os03t0243300-01) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 4 |
Tissues | pistil |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0243300-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014125 |
PMCS | 0.160097868 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7582931-7581196(+) 7582383-7581198(-) |
Potential amino acid sequence |
MLQSQLSNLNCCSQICFSTNFKS*(+) MEEERARQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQ QALAMSMEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQ RIIAFIGSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVH VPPGENALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEE ERARQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQAL AMSMEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRII AFIGSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVHVPP GENALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEEERA RQEAIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQALAMS MEEGSSGAAAADAAMAEAAVDDQDLALGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRIIAFI GSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDSSHIVHVPPGEN ALSDVLISTPIFTGEEGGSGFAASAAAAAATGAAGFEFDVDPNVDPELALALRLSMEEERARQE AIAKKAAEESSGAENKDHASSSNADSVMAEAEPASNAADDKKDQPKEDDDAQLLQQALAMSMEE GSSGAAAADAAMAEAAVDDQDLAL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |