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circRNA ID
Zm00001d047467_circ_g.1
Alias
zma_circ_006425, circMo17-01461
Organism
Zea mays
Position
chr9: 130978326-130979343  JBrowse»
Reference genome
AGPv4.38
Type  
ei-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d047467
Parent gene annotation
hAT transposon superfamily protein
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
CAGAAAAATACCTCCTGAAACAAGTATTTCTCATCTCTGAAATTTCCTCATCATTATGAGGAGC
CTGTCGGTTGAGGACCTCATTGATCCATGCATCAGTgatacgtcatttctcaaaaaatactgat
acgacgatacacaatatatattataaataaaattaaatgttgaaatgtctgaaatagaccaccg
ccgatcag
Support reads
3
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GT-CC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GATACGTCATTTCTCAAAAAATACTGATACGACGATACACAATATATATTATAAATAAAATTAA
ATGTTGAAATGTCTGAAATAGACCACCGCCGATCAGTTCAGTTTAAGGGCATTAGAAGTTAATG
TTCAACAACTTTGACTAAAGTAATCATCTACTTCCTCTTCCAGAATTTATCTAGACTCAAATCA
ATGAATCCAGCATGCCAAAAACATGTGTAACGATACGCTATACCAGCAGACTCGCAAATAATCA
CTAGTTCACCACACAAGTTCTAAGTTCTAATTCTAACAGACCAGACATGAAACAACAACTAGAT
TCCATTCTGCATCTTCGGTCAAACCCAATGCCTCAAGATCTTCAAACAATCTTTCTTCAAGTTA
TGGCTCATCCAGTATCGATCAGCTTGCTCAAGAAAATCAGCACCACCCTCAAAATCAGCTTCGA
AAGTGTCAGCTCCAACATCCCACATTGCTAATGGACCACAACGGTATTCATCAGATTTTCTAGA
AAGAAGACGCGAGTTTTGGTGTGTGAAAACTAAATCCTCAGCACGCCCAGGATTTAGCCTACAA
TTTAAATTGCAGATTTGTATTAGGAATCCAAATTCATACATGTGTGACCAACTGATCATAATGA
ATATGACAAATAAAATGAAATAAAATTGAACCTGTTTCTCAATGAACTATGGATCAGCCCATAT
GTACTCCAATTTCTTTCAGCACAGGAAGATGATGCTGGCTGTCCAAGTAATTTAAGTGCCAACT
TCTTTAATTCTGGAGCAGAATGGCCATGAATTCCCCACCACATTTTTGGTTCCATATAACTTCT
ATCCTCAAGTGAGTCAAATGAATTGAATCCAGGTCCAAACAAAGAGAAATTAGCATACTGCAAC
TTAATCTTTTTTAATTCTGCACCAGAAAAATACCTCCTGAAACAAGTATTTCTCATCTCTGAAA
TTTCCTCATCATTATGAGGAGCCTGTCGGTTGAGGACCTCATTGATCCATGCATCAGT
Number of exons covered
Zm00001d047467_T002:2
Zm00001d047467_T003:2
Zm00001d047467_T001:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Luo et al., 2019

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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