Detail information of BGIOSGA014698_circ_g.1


General Information
CircRNA Name BGIOSGA014698_circ_g.1
ID in PlantcircBase osi_circ_014575
Alias Chr04:26595789_26598535(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24726985-24729731  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014698
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA014698-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAGTATCAGAACTATTAGCCATTGTACAAAACCAGATTTAAAAATCCACCTCTCAGCTTCCA
GGTTAACAATTTGTTCCAGCATGTTATGAGCTAGTCccatcctggaagcttctcgagaaccctg
ccaaccttcggtgtaactctattcacatccgttcttagttttagtaagaaagaatgatcttctg
attcgact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCCTGGAAGCTTCTCGAGAACCCTGCCAACCTTCGGTGTAACTCTATTCACATCCGTTCTT
AGTTTTAGTAAGAAAGAATGATCTTCTGATTCGACTTGCTTTGGGAATGCATCCTTGGAATTAC
TTGCCCAGAAAAGGGTTAGCTGAAATTTTGTTGGTGAGTCCTTACCACCAGCAAACTGGATTGT
ATGCCACCCATCGATCTCGCTCTTATTACCCAGTGGAACCAAGTTCTCCGAATCCACTGAATAA
AATAGCATGTAAAGGTCAAATAACATGAAAACAACAGTTATCTAGAATTATAAAAAAGTATTTG
TTTGGGAAAGGTTAGTGGTTCATGTAAAATGCATTGCAAAAATCACCATGAACTTGTCACTATT
TGTCTTGGTTTCTTGTAATCAACAAACATAATAGAGTGGATTTTAATCATCTAAGTAAATAAGA
GTGCAATGGCACCTTGTTATGGTAACCATTTCGCTCACTGCCTATTGGTACTTGGGCTAATAAA
GTAATTTACTCTCTACTGGTGACTATAATACATTATCATAGCAGCTGTCAAACTAAAGTAATTT
ACTCTCTACTGGTGATTATAACGTTCAACACTGTGTTTATTTGATAGTTCAACTTACCATGAAC
TGTGAAGTCATCAATTTCTTGTTTATTGATTGCCAGTGACCAACGCGTAGATGACTTAGTATCA
ACTGATATTATTGTTTGTCGAGCATCATTGGTAACAGAATCACTTTTCAAACTGAGCACTGGCA
CTTCTGATTTGCTCCATCCAGTATTGGTCCCTTCGTAACTCAAACAGCCATATTTCATGGTAAA
TGTAACAAAATCAATAGCCCTATTCCTCCCACAAGAAAATTCTTCATCTCTAAGGTCTACTAAT
TCCTTTGTCAACTTTCCAGGTGTATTGGAGAACAGAGTAACATATGATGATGGTTCTGTATTAC
CACTATTCACCGTTGTAGTGTCAACAACATGCACAACCTGAGCAGAAACAAATCGTTAAATAGT
TATCCAATAAGTATGATAATTAATCTTGTATTGGTTGATGCAGTGTGAAAGGGACATGATTAAA
AAAAGTACATGCAAGCAGGATTCTAACAAGAGAACAGATTTCCAAGCATTTTAGGACAGAAATA
TTTATATATCACACAAAATCAGTATTGTATTGTTGTCAATATGAACTCTTCTCTATGTACAAGT
AATTGTACAACTTAAGGTACATTTACTCTTTTCTTGCTGTTACCCCTTGCCGAACAATCTTCGT
TGTCAAGTATTGCAAATTAATATTCGGATGGTGGTGGGAATATGACAAAGAATTAACTATATAT
TTAAGAGAGAAACAGTAGCCTGTTTGACAATGATGAATGGCATGAAGGCCATTCCATATGCTCA
ACTCTTATGCAGAAAATAGTAACAGTAAAAGAAACTTAGAAGTTTGAAAAAAGAGGATACATGT
AAACTTCCATTTCGTTTAAAAGCAGACTTGCATTTGTCATACACATCAAAGATGACCACAAAAG
GTTGTTAAAACATATGAATATATGATTAAAAGAACCAAAAATGTCATCACCAGGTTATGGATTG
GACAAAGAATGAAAAATAATAGAAATAATATGAAAATATCACTGCAAAACCAAAAAGTTATGGT
TCATTTACTCAAAAAAATGATAACAAGATTTTTCAGATAAATCCAATGGTTTAACTGAATTGTA
CAGTAATTGGTATTTAGAAGTGCTTACATTTACAGACCGAGCAATATCCTCCGTGAATGCAGGG
AGAATGCCACTTGACACCAGTGCAAGTGCAAGACCAAAGAATATACATAACAGAAAACCAAGAG
TCCTTTTAGCACCTAAAGGAAAACAATATTTGGGGATATCAACCTCTTTGCGATGTTTTGAACA
AAGGGAAGACTATATGCAGTTAAGCAATGTGGACAGGTGTAACAGTTTGATGCAAAACCTACTT
TTGAGATTTTGAATAAACATGATTACAGAACAATGTAACTGCAAAGGGAAGCAAAGCATGACGA
TATATCTAGCATGTCATGGTTTACCTGATATATGAACGTAAGAAAGAAGATACACAAAGGTAAA
ACATATGACAATAGCAATGGCAACAGAGACTACTACATTGCCAAGCCAATCTGGTAGGCCACCA
GGGTTCCTGCAAATTTAAGGTACACATTAGTTTGGTTGATTTAAATTAACTGATATGGTGCCTT
ATAAAATCTATTAGCAGTTAAGTTACAAAGTATTTACAGTCGTATCCAAAAACAGCATATCTTA
AAACAGAGAACCCTCTTGGAGGTTCCAAGCTCAATATATGTACCTATCAATGCGTACAATACTC
CCAATTATAACATCAACCATGCGAATAACTAAACCAGCAGATGAGACAACTGGTGCAGCCAATG
CCAGAACCAATGTAATAACCTTGAGCTGTTTAGGTGACCGAGCAGGAGATAGTGTTGCTTCCAT
AAGACCGTCTGCAAAGAAATAACAGCTGTGAATACTCGAGGTAAATATTAATCCATCACCTTCA
TCAGACAGTAACAGTAACTTACATGCAAAAGCAGGCGAAACAAGCCAGATGAGTGCTATGTAAG
ATGATCCAACCTTCAAGTATGTTCCCAGTATCAGAACTATTAGCCATTGTACAAAACCAGATTT
AAAAATCCACCTCTCAGCTTCCAGGTTAACAATTTGTTCCAGCATGTTATGAGCTAGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021