Detail information of Os05g0529200_circ_g.2


General Information
CircRNA Name Os05g0529200_circ_g.2
ID in PlantcircBase osa_circ_042159
Alias NA
Organism Oryza sativa
Position chr5: 26287830-26288007  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0529200
Parent gene annotation Crotonase, core domain containing protein. (Os05t0529200-01);Cro
tonase, core domain containing protein. (Os05t0529200-02)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered Os05t0529200-01:1
Os05t0529200-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGGCAGAGCGTGAGGAGGAACCCGCCCGCGGAGGCGTGGCCCGTGACGGCGGCGACGGTGGG
CATGGGGAGCGCGAGGAGATCGGCGgatggccacgaagtagggcgggagcgggaggccgatgtc
gatctcgctcatgtagagcacgccgcggtcggcgcgcatgaggcggtagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 178
Transcript exons: 26287830-26288007
GATGGCCACGAAGTAGGGCGGGAGCGGGAGGCCGATGTCGATCTCGCTCATGTAGAGCACGCCG
CGGTCGGCGCGCATGAGGCGGTAGTCGTGGCAGAGCGTGAGGAGGAACCCGCCCGCGGAGGCGT
GGCCCGTGACGGCGGCGACGGTGGGCATGGGGAGCGCGAGGAGATCGGCG

Genomic sequence GATGGCCACGAAGTAGGGCGGGAGCGGGAGGCCGATGTCGATCTCGCTCATGTAGAGCACGCCG
CGGTCGGCGCGCATGAGGCGGTAGTCGTGGCAGAGCGTGAGGAGGAACCCGCCCGCGGAGGCGT
GGCCCGTGACGGCGGCGACGGTGGGCATGGGGAGCGCGAGGAGATCGGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.370783052
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study