Detail information of AT1G60800_circ_g.11


General Information
CircRNA Name AT1G60800_circ_g.11
ID in PlantcircBase ath_circ_008213
Alias NA
Organism Arabidpsis thaliana
Position chr1: 22386158-22386444  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT1G60800
Parent gene annotation Protein NSP-INTERACTING KINASE 3
Parent gene strand -
Alternative splicing AT1G60800_circ_g.10
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G60800.2:2
AT1G60800.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATTCTCCAGCTACAAGGATCAACTGAATTCACATCCCAATTCTCAAGAACTTTGTACGGAT
CATTCAATTCATTCTTCACAGCAACCAAAGCTGTCAactgattgtaaataggtgaggtttccga
ttctaggagacaatgtaccagacaagctttggctaggaagatccctgtttcattaagaaaacaa
gacaagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTGATTGTAAATAGGTGAGGTTTCCGATTCTAGGAGACAATGTACCAGACAAGCTTTGGCTAG
GAAGATCCCTGTTTCATTAAGAAAACAAGACAAGTCTTAAAGATCTATCTGGTTTTTTTAATCT
AATATACGAGAAGAGAAGAGAAGACTCACAGTGAAGAGACATAGCCATCAGTGCAAGAAACCAT
TCTCCAGCTACAAGGATCAACTGAATTCACATCCCAATTCTCAAGAACTTTGTACGGATCATTC
AATTCATTCTTCACAGCAACCAAAGCTGTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.242806738
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017