Detail information of Os06g0332400_circ_g.4


General Information
CircRNA Name Os06g0332400_circ_g.4
ID in PlantcircBase osa_circ_030731
Alias NA
Organism Oryza sativa
Position chr6: 13166297-13168945  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0332400
Parent gene annotation VHS domain containing protein. (Os06t0332400-01);VHS domain cont
aining protein. (Os06t0332400-02)
Parent gene strand +
Alternative splicing Os06g0332400_circ_g.1 Os06g0332400_circ_g.2 Os06g0332400_circ_g.3 Os06g0332400_circ_g.5
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0332450-00:2
Os06t0332400-01:4
Os06t0332450-00:2
Os06t0332400-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGCATAGCAGTTCGTGTAGAAAAACCAAAATCAGTCCAGGCCCGAGGGGACAAGTCTCCATC
AATCAAACCAGAAGGGGCAAAACAGCCAGATCAGAGcgcgctggagctgtatttcctcaaagac
cagacagctctgtgccaatctatactcctccacagactcaacctctacggaatcttcctccagc
tctgcgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATACTCCTCCACAGA
CTCAACCTCTACGGAATCTTCCTCCAGCTCTGCGTAATACTGAGCGTCAACAAGAAGCACCTGA
ATCTTCTTCAACACCAGAAGTACCTACACTGAGGTAAATGGTTTTGAAAGCTGCTTTACCATGC
AGCCATGGAATTAATATTGTTCATAACTAACATGGAAGTCGGGCTTTATCTTGTGATTTTAAGT
TCAGGAAAAAAACTGAGGGTTATCGTATTATTTGTCTTTTCACCTTTTATGCTTTTTACTTGTT
CCCTAAAAGTAAGTTTGGATGATTTAAACTAGGACTGAAGCACTTGTATAATTTCATTTCTATT
AAGATCAATTTGTGGGAGATTGATAGGATGCTACCTAACAAAACACCTATAACATTTTGTATGG
ATTTACGACAAAGTATGGATGTATAAAAAGATTAAGATCAATTGCATCCCTTTCCATAGCTTGA
CTTCATTTACCTTCAAAAACTCAGAGCTTATCCTTTCCGTGGCCTTGTCAAGCAACTGCATGTA
ATTCCCTCTTTAATATTAAAGTTGCCTTTTCTAAGGAAGGTATAAATCACATTATCTTGTATCT
ACTCCCCACCAGTTTGACAGAAATCCAGAATGCACGTGGTGTCATGGATGTTCTTTCAGAGATG
TTGAATGCTATTGATCCTGGCAACAGAGAGGTAATTTTCCTGTACATTGCAGTTCATATAATGT
TCAGAAAGGTACTGCAGAGAAAAAAGATCCATTCCATTTCTAGTGTAGGATCTTTTTGATAAAA
TTGGATATTTTTGCTGCCAAGATGCTAAAATGTAATGAATACACAGGGTCTAAGACAGGAGGTT
ATTGTGGACCTTGTGGATCAATGTCGTTCTTACAAGCAGAGGGTGGTACAGCTTGTCAACTCAA
CCACGTAAGTTCCTTTTTTATGTCTTTGCCTTTCCAACCGTCATATGAATTGCAGGGAATCAGG
TAGTGGGAAACATGACATACATATTTCTGACTTCCTTGTTTTATAATAAACAAAGCAGAACTTT
GCTGCCAAGTTTGTTATCTTTCCCAAATTGTTCAATTATTTGAAGGCCATATGATGCTTCAAAT
CACCCTGCTAAAGACTGCCCATTGATTTTCTCAGAATTTTTTTTTCTAAGTTTGTTATCATGCC
CATTTTCTTCAATTATTTGAAGGCCATGTGATGCTTCAAGTTTCCCTGCTAATGCTGTCCATTT
ATTTTCTTTAATCCATTTGTCTAAATCAACTTGGGTTCGCTCTTTAAGCATTTTCTGGAAATAT
CACTAATCCTAACAAATTCCTAGTTTGTGAATAGCATGTAATTGACCTGTTAATCCTAATGTAG
ATTTTAGACATGTCTTAAAAAGCATCCTATTCCTGATGGCATTTCCAGATCACAAGTGGGTTTT
AGTGTAGTGGATTTCTTCCTTGAATGTATGCATTCCTATACTTGGACCAGTAGGTCAGAGAATC
AGATATAAGATACAGTTGAACGATGATTCTGGGGGTGACCCACATCTCATAGCCAATCATGAGG
GGAGGGGTGGACAAAAGCTAGTTAACAGAGCAGGAAATTCTTGTAAAAGTACCACTCTACCTTT
ATTTTGTTTCACACATTGGAAAAATACAGCAACATGTTTTGAAAACCTGAGTAATAACTTCTTA
CTACACGTGCTTCAGTTACTAACCAAAATGTGATATAGTGCATTCTGTCTGATATCACCCTTCA
TTTAGTAGTGGTACCAATCTACCGTTCACCTGTTAGTCTCCTTTCTGTGCACAGTTGGTTGAAA
ACCTGGTACAATATTCGAAAGTAAATGCTAGGTTCCTTAAACTTGTTGGGTGCCATCCAGGAGC
CAGCACCGCACACAACATGGAGGCCACCTGTGGCATGCGGTCTCACATGTATATGTTTGACCCA
GGGTGCACAGGAGATACCTATGCACAAGACCCTCAAATCAGTCTCACTCTCACCCTGGCAGTTT
TTAGGGGCTTATGCATGAATACCTCATCCAGGGGTCATGTACAGTGTATGTGAGACCTCGTGCC
TGGCAGTCTCCATTCTCCACATTGGCATGCCATGTTGGCTCCTGGAGGGCCTATGGGCATTTTG
GACTTCTAGATGTATGTCAAACAAGATTATGGGTCTAAATATGCATTGTCAAAGTTCAGGTAAC
CTGGATGACACTTGACCGTAAGTTAAGGATGACTATTGTATTTTACTATGTGTTCTTAGAACTC
TGAGAATTGATGTAATACAGGATACCTGTGGTTGAATTTTTTTTTTCCTTAAACTTCTTTTGAC
GACATTTTTTTAATCACCTTTTGAATTGCTGTCTTTCCATTGGCTTCATAGGAGTATGGAATGG
TCCTCTTAAATTCTTTTTGTGCGTTGAACTGTGACAGGGACGAGGAGCTGCTAAGCCAGGGTCT
TTCATTGAATGATGATTTACAGCGTGTTCTTGCAAAACACGATGCAATTGCTGCAGGCATAGCA
GTTCGTGTAGAAAAACCAAAATCAGTCCAGGCCCGAGGGGACAAGTCTCCATCAATCAAACCAG
AAGGGGCAAAACAGCCAGATCAGAG
Conservation Information
Conserved circRNAs osi_circ_016146
PMCS 0.205453152
Functional Information
Coding potential Y
Potential coding position 13166981-13166453(+)
Potential amino acid sequence MDVLSEMLNAIDPGNREGLRQEVIVDLVDQCRSYKQRVVQLVNSTTDEELLSQGLSLNDDLQRV
LAKHDAIAAGIAVRVEKPKSVQARGDKSPSIKPEGAKQPDQSALELYFLKDQTALCQSILLHRL
NLYGIFLQLCVILSVNKKHLNLLQHQKYLH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017