Detail information of Csa1G560670_circ_g.2


General Information
CircRNA Name Csa1G560670_circ_g.2
ID in PlantcircBase csa_circ_000453
Alias Chr1:20336460_20341451
Organism Cucumis sativus
Position chrChr1: 20336460-20341451  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ue-circRNA
Identification method Find_circ
Parent gene Csa1G560670
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa1G560670_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Csa1G560670.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCCCTTGCTAACTCATGTCTCAACTTTTCCCCATGAATGGAAGATTGGAAGCCTGGATAAT
AATACACCTGGCCTCCAGTATATTTTGCCAAAGTCCcttgtattaagcattttgctgaacttgc
cgatgtatttgtagaagccaatcaacataaccattcgtgccacccatttggtcctcaacaagat
ttgctagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTATTAAGCATTTTGCTGAACTTGCCGATGTATTTGTAGAAGCCAATCAACATAACCATTC
GTGCCACCCATTTGGTCCTCAACAAGATTTGCTAGGAGGAGGAAGCCTTCTCTAGGTTGTTCGC
CTTGTCTAACAAGATGAGATAGCTGATAGTATGAAGGATCGGTTTCTCTAAATTTCTGGAGCGT
CTCTAATAGTTTTCTTGACATTACATTATCATGATCACTCAGGATAACCTGGATTTTCAAAAAA
GAAAACCATTACTAACACCAGAGAAGCAAACTAAAATTGAGCTAATTAATTGAACGTAGAGAAA
ACAGAAGGGGTAGACTGTAGATATAATCAGTTCAATCATACACAAAATAAGCAATTGACCAAGG
TTCCATGTTGAATCTAAAAAAGAGAAAAAGCGAACTTTTTAGAGAGAGTGAGAAAGCATAAAGT
GCTAAGTAATCTTCCTTCATCTGAAAAACACAGATGCTAAAAGCTCAGTATCACAAGTCTGATG
AGGTGGAGCAGCATAATTTCTCAAGCCATGTTGGTAACCTCTTTTTTCTTTTAACTAAGAGTTG
CATCTAAATTACAGTTCAGAGACAATACAACTTAACCAATAAGATCATTGGGATATGTAGAAAC
CTATAGAAAAAAAAGTTAGTAAGTTTTCAATGTTTAACCTCTTTAGACCCTGTATGCATTTTCA
ACCTATGATGCAACAAAAATTATGACAAATATAAATAACCTATATTGAGTGTAATGGGTCAAAG
ACAAATTCAACTAACTCACATACCAACAGTAAGGTACGTGAGAATGACAGGTCCAAGACAGTTG
TTCCTGAAGATATAGGTGAGCAGGGCAGTATTGATAGGGTCATTATAGACAGAGAAGCCAGGAT
TAATGAGAATGAGGTTGTTGTTGAACATACTAAAAACAAAACTAAGTCAGACCATCAGGAAATA
CCAGTATGTATGATCCATCTCCACTAAGGAAAGGTACCAGGTCCTGTACAAAGCACTCCATCTC
TAATTATGTGTCATACGAGAATCTCTCACCACAGTTGAAGTTTTTACTGCCAGTCTTGACTCTA
CCACAATACCCAAGAGTATTCACCTTGTCTTAGAGTGGAAAGTTGTTGTCCTGGAAGAAATGAG
AGCCCTGAAAAAGAACAAGACCCGGGATCTTTGCACGCTCCATAAGGGACACAAGACTGTCAAA
TGCAAATGGTAGTTTACACTCAAGTAAAGAGCAAACGGTACCCTTGACAGACAGAAGGTCAAGA
TAGTTGCAAAAGGGTTCACTCAGACTTATGGGATTGACTATTTTGTGACTTTTTCTCTTGTTGC
AAATTTTAACACTTGCAATGAATAAGGATTGACATGTATATCAGTTTGATGTTAAGAATCCGTT
CTTGAATAGGGATTTAAAAGAGGAAGTATACATGAGTTTGCCTCCAGGATTTGAAGCTCAATTT
AATAATCAGATTTGCAAGCTTCGGAAGTCCTTATACAGGTAATCACCAAGAGTGTGGTTTGACA
GATTTACCACTTTCATCAAGACTCAGGGGTACAATCAAGGGCACTCTGATCCACCTTGTTCACC
AAAGCCTTCAAGGCAAGAAAAATTGTAGTATTGATTGTTTATGTTGATGACATTGTGCTACCTG
GGGACGAAAATAATGAGATCGCCTAACTAAAGAAGAAGATGGGGTTTGAGTTTGAAATCAAGGA
CTTGGAAAATCAATACTTTCTCGGAATGGAGATTGCTAGATCCAGAGAAGGCATCTCAGTGTCC
CAAAGAAAGTGCACCATGTTTATTAGCTGAGACAAGTATGCTAGGATGTTGTCATGCTGACACA
CAATGCCAAACTCAAAAATTCAGGTGGCAGGGTTCCTATTGATACAAAAATATATCAGCGCCTG
GTGGCAACGCCGATTTACTTATCTCACCCTAGGCCTGACATCTCCTATTCTGTGAGCACCGTCA
GTCAGTTCATGCAAGCATGTTATGAGGACCGCATGGAGGCGGTTAACAAGATTATGAGGTATTT
AAAAGCAACTCCTGGTAAAGGTCCGAGATTCATGAAGATTGACAGAAGATGTGTTGAAGCTTAT
ACTGATTCTGACTGGACAGGATCTATTGTCGATAGAAAGTCTACCTCAGGATAATGTACTTTTG
TGTGGGGCAATCTTGTTACTTAGAGAAGTAAGAAGCAAGGAGTTGTGGCTAGAAGCAGGGCTGA
AGCCGATACATGGCTATGAGTTTGGGGATCTGTGAGGAGATTTGGCTCCAGAAGGTGTTGTCTG
ATCTTTGTCAAGACTATGAGGTGCTTATGAAGTTATTTTGTGATAACAAGGCAGTCATTAGCAT
TGCCAATAATCTAGTCCAACATGACATAACTAAACATGTGCAGATTGACAGACATTTTATCAAA
GAGAAATTTGACAATGGTAGCCTTTGCATTCCTTACATACCCTCGAGCCAACAAATTGCTGATA
TTCTCACAAAGGGGCTCCTTAGACAAAACTTTGATTTATGTGTTAGCAAACTGGGTCTTTATGA
CGTTTACGTCCCAACTTGAGGGGAGTGTTAGAAATAATGGGCTTAGGTCATGTTAGAAAGCCCA
ATGGAAGTTTCGTAATTTACTTTGCCTATTTTTATCTGTTAACTAGGCTCATTTACTTCCCCTG
TGTACCTTTGTGATTATTAGAAAATAATAAAAATATCAACACCATGGATTTTTCCCCTATACTA
GGGTTTCACGTAAAATTGTGTTTGTTCTTCGTGTCTACTTTCAATAAGATTGAAATTAGGACTT
AGATTCAGGCCGAATAATGTCTATTCCAAGGTTCTTCCCTAAGCCAACTCACTAGTTTTTCTAA
GTTCCTAACCAACTTGTTCTGATCCAAATACTCTCTCCTCTTATTCAAGAATGGAACTCTATTA
TTTAAATTTTAAAACAACTACATACCTTTGATAGTTCTGCTGCAAAGTCTGCCCCAAGTAAATT
CATCGACACATCGGGTGAAAGCACTCTACCAAACCAAACAATAAAGCGGAAGCCGTCGTCATAC
AAGTACAGGCCTCTGGAATCTAAGCTATCAGCGGTCAGTGGCAACCTTTTCTCTATGCTATTAA
GGTCAATAGTCTGAGTGGGAGATGCCTGCAAGTTAAAGTGGAATAAACTTATAGATTCTGAGAA
TATATCGCTTATTTTTTATATATAACTGAAGTGTAAGATTTGTGACCTTCAATAGATACTCATC
AAGTCGAATTAGTGAAGGATATAAAAGTTTCAATAGGTTTTTAACAGGAAGAATCATCATTGCA
AGGCCTAATGCACATCGCTCATCAAGCACAGCGTCAGCAAAACCCCCTCGAAGAGGTACTGATT
TGCACAATGCTAACCCATATAAAGGCAAGAACTTAAGAGACTCGGGATATATCATTCTGCCTCC
CAAGCGATGATGTACAGCATAGAGGTTACGATACTCTCTCAAGGCTTTAACGATTCTCTGTTGA
ACTGAAGTGCGAGCATCCTCCAGCTTATGGGACAGTGTTTTCTCAATTGCTGCAAGTTGTTTCA
GTTAGAATTTAGAATGAGAGATTAACAAAGTGAATAGACGATAAATCTTAATAATTGAGGCTAT
CAAAGTCTCACATGCCATGCATAGAAGTTTGTGCCTAACATACCTAGCCTACTAAACAAGGAGA
CAATGGCACCAACATCAGCCTGGCGGTACATCTCACCCAAATCTGTAACCACGGGTGCTGCTGC
TGTATGAACTCTAATACGTCTCTCTCCACAAGATGCAGTATATCTTTTTATTGTCAAAGAACAA
ACTTATCGATAGAACCCTTAAAATAGAGAAAATAAGTTAATTACCGGTAGAACCTAGACACCAA
CTTTGAAAACATCAATGAACTCAACCAAATCAAGATCAAAGAAATATGTGTGCTAGGTAAAAGG
AAACAAGCAATCTTATGAGGAAAAACAACAGTTTCATGCACTAGTAGATTACAATCTTCATAGG
GTTACTAGTTTAGATCAAGATCACACTGCAACTAGTAATTACCAATTGAAAATTCGATATTAGT
TAAGGAGATTTTTCAAAAGTGTAACATATGAATTTATTTGTATGCCTAAAAATGGATTACTTAC
AATCCTGTAAATTAAATGCCTAATATTAATAAATTATGACAGAACATTCCTAAAAAGGAAAAGG
GAAAAAAATCATTCAGATTGTGTCTATATATATATATATCAAATAAAATAAAATAAAATAAAAA
AACTGACAGTACTCTACAGATCAGAGAGAAATACTTGAACGCAAAACTCTATGAAATCTGGCAG
AAATTCAATCTCACATCTGAACCTGGACTATAAAAAATTGAACTCCATGACCAAATGCATGAAT
ATTAAAAAACGAAAATGGTTCAGAAAATTTAAAACCAAACATTGGAGAAACACATCGTGTGCAC
AAACCTACTTAAACAGCTGCTGATACTTAGGGACTGGGACTGCTACCTAATAGGGGAATTAATA
GACGTTAGATGGGTATTACCCCAACAGTTTACTCAAAGGATACAGTAAGGCAACTTGGAAGTAG
ACTGTCTGGGTTGTTAATAAGGTCTCTTCATAAGAAATTTGCATTGCAAATGCTTTATCACAAT
CTACAGCTGGAAGTGCCAATAAATCGGTGCTTCTTAACATAAAATTCCCATGAAACGATGTAAA
GCGGATTCCTAAGAGAACAAACACAAATAGTGAGAAGAGAAGCATCGACATGTAAGTAAAGAAG
GAGACGAACAATCCTTGAGAACCAATAAAAAGAAAAGATCACCTTTTCCGCATCTTATACGCAT
TACAGCTTCCCAGGCAGTTTCTCTAGTCAGGTCCCTTGCTAACTCATGTCTCAACTTTTCCCCA
TGAATGGAAGATTGGAAGCCTGGATAATAATACACCTGGCCTCCAGTATATTTTGCCAAAGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.102044742
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020