Detail information of BGIOSGA031708_circ_g.2


General Information
CircRNA Name BGIOSGA031708_circ_g.2
ID in PlantcircBase osi_circ_008505
Alias Chr10:19216765_19217804(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16233110-16234149  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031708
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031708-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCACGCCCAAAATTCCTCTTAACAACTAGCTCCTGCTGAGACCCTTCTCTTAATTGTCTTAT
CTTGTTCCACCACTCGTTCTCATCGACCTTTTCCACcctgattggctgctactgcttttaaaaa
ctcctctctcattttgaatgctggtagtttatccctaaaagattgcatcgacctagcacttggc
atcatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGATTGGCTGCTACTGCTTTTAAAAACTCCTCTCTCATTTTGAATGCTGGTAGTTTATCCCT
AAAAGATTGCATCGACCTAGCACTTGGCATCATCTGAAGTAAAAACATACATGATAAGATCTCT
AGCACAACGGCACAACCTAAGAAAAATGTATACCTTCAGCCTTTTTCTTTAGGTGTGGATGTGT
GAATGGCACAACAATTAAAAATGATGTGTTTGCATAACTGGAGAATAGTTGGCATTACCTTTCT
TGAGTTCTGTATATCCCTAAGCTCAGAACTGAGCCTTTCTTTATCAATATCTTTTGTTGATTCA
GTTACTGACGAAGATGTGCTTGGCCGAGATTGCCTCGTTGTTAGAGTAGATGTGCTTGCAGAAT
CATTACTATTTGACTTTGCCTTGGCCAAAAGGCTCTCCACTCGTCTCTCAGTCTCATTAGACAT
CCTAATCTGTCCGTAGTTTAAATATAATAACAGTATAAGTCACATAAGAAAAGCACCTATATTA
TTTGTGTACTTGTAAGGCACTAAATAACACCTCTTGTTGTGTTGATCCATGTCTCTCATCAAGG
TCTGCTCGATAATCAGGTAGTGGAACTTTGCTGAAAACAATTGTCTTCCCTTTGTTGTACACAT
TGCTATCTTCCCCCAGGTTAAAAACAGGATAATGAAAATGGAATTTGTCAGCCTCCAAGTGTAA
GTTAGAGATACGGAAAAAGGCATCAAATGATCTATTATATACTATCAAGTAGTCATTGCTTTAC
TGGATACAAGTTAAATAAGTTTCAACACCAACTATTCAATTAACAAAATCTGAGAACGGTGATG
ATAGCAAGAAGTTGAATCTAGTTAAGAAAAGTAAAAGGCTAAATAAAAAATGTGACACTTACAA
GTAAAGCCCTTGTCTCTGAGCCATATCTGCCAGTATGTTCTGTCCATCACGCCCAAAATTCCTC
TTAACAACTAGCTCCTGCTGAGACCCTTCTCTTAATTGTCTTATCTTGTTCCACCACTCGTTCT
CATCGACCTTTTCCAC
Conservation Information
Conserved circRNAs osa_circ_007076
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021