Plant Circular RNA Database

Detail information of Os03g0718000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0718000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_021305
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 29069118-29070879  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0718000						
					
						Parent gene annotation
						
							Similar to Anthranilate synthase beta chain. (Os03t0718000-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0718000-01:5

General Information
CircRNA Name	Os03g0718000_circ_g.1
ID in PlantcircBase	osa_circ_021305
Alias	NA
Organism	Oryza sativa
Position	chr3: 29069118-29070879 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0718000
Parent gene annotation	Similar to Anthranilate synthase beta chain. (Os03t0718000-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0718000-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCTTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCT
TTTGCTTCAGAGTTCTTGCGGGTCCACTAGTAACTCtttgggagaccagaaaacagtgttccat
caagtttctcctcatagtgaacaagggatcctttcccatgcacaactccataaggagaacgaac
aaccttcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 481
Transcript exons: 29069118-29069217,29069311-29069421,29069548-29069585,29
069684-29069754,29070719-29070879
TTTGGGAGACCAGAAAACAGTGTTCCATCAAGTTTCTCCTCATAGTGAACAAGGGATCCTTTCC
CATGCACAACTCCATAAGGAGAACGAACAACCTTCCCTCCAAATGCCTCCCCAATACACTGCAA
ACCCATGCAAACCCCAAACAAAGGTGTAGAAGGTCCAAGATCTTGAACTGTTTGCAATGATATT
CCTGAATCTTGAGGTGTGCCAGGGCCAGGGGAGATGAGTATTCCTCTAGGAGAAATCTTCTTAA
TTTCTTCCACGGTGATATCATCATTGCGGTACACCTCAAAGTTAGCTCCCACCTCACCCATGTA
CTGGCATAAATTATACGTGAAGCTATCGTAGTTATCTATAACTATGATTGGTCTAGTATCTTGC
TTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCTTTT
GCTTCAGAGTTCTTGCGGGTCCACTAGTAACTC
						
					

						Genomic sequence
						
							TTTGGGAGACCAGAAAACAGTGTTCCATCAAGTTTCTCCTCATAGTGAACAAGGGATCCTTTCC
CATGCACAACTCCATAAGGAGAACGAACAACCTTCCCTACAAATGTGCAGCAGATTTTCATGAA
GCAACAGGAAGAAAGGGTTAAGTCTAAATGCAGTACTTAAATGAAGAACTTCTGCATGTACGAA
CCTCCAAATGCCTCCCCAATACACTGCAAACCCATGCAAACCCCAAACAAAGGTGTAGAAGGTC
CAAGATCTTGAACTGTTTGCAATGATATTCCTGAATCTTGAGGTGTGCCTGCACTTTCAAAAGA
AAAAGGAGGAAAATCTTAGGCTTGCCATGCAACAGAGTGTAATTACATTGAGCACTATATTATC
TCATATGCTATGAATGGAATTGCAAACAGCAAATAGAAATGCTGACCAGGGCCAGGGGAGATGA
GTATTCCTCTAGGAGAAATCCTGTGGAACAAGCAAAATGCTGCAGGTGATTTTCTTGATAGAAA
TCAGAAAATTAGTGTGCGAATTTGGACTAACAAGTAACAAGGATGTTTACTAACTTCTTAATTT
CTTCCACGGTGATATCATCATTGCGGTACACCTCAAAGTTAGCTCCCACCTCACCCATGTACTG
CAAACAGAGAAATTCTATAATGTTCACTGCAATCCAGCTGAAGTCATTTATTATGCTAATATGT
AACAGCCTATTCATTTAGATTCTAATGAGTTTCTTTTTGCATATTTTGCAAGTCGGATATCATT
TTTACATTCACATATAACATTATTAATTGATGGCAGGTTTGTGATCCTTAGTTTCTGTTGATTT
AGGCAGGTCAAGATCTTCAATCCTAATTTATTTTTATTTTCTTCTACAATATCTTCCGTTCTGA
ATCTGGAATCCTAAATTTTTCCATTCTAATTTATTAGAAAGAAGTAATGAAATGCAAAAGACCT
GCATTAGCAATAAAGATAATACACTTGGTTTCTGACCGCTCAAAAGGAACTTAATTAGGACATG
TATTAAAGTTATAGAACTGACTTGGAAATTATAGATGAATATTTGCTTGAGGAATAAACTCCAG
GTTCGTATCATTCAGTCAGTAATTTATCCTTTTAGCATGGTCTAGAGTTGTTTTCTGATTTCCA
TGAAACCGAGTTTGTTTGATGCGCCATAGAACTAAGATTGATGTATGCTATGCCATACTACAAA
TTGATTTACAACGTGTCCTTTGTTTGTTGATGTGATTAATCAACAAAGACAATGGTTTATTCTG
CTAGAAAAGCCAATTAGATATATTTCTCTGTGAAGCTACAATTATCCATCAAGCACTTTGGATT
TTATGAAACATCAAACAGGATATTCTCGTTTTGTTAATCATTTGCATGGTTCAAACACTAAATA
AAGGTGTTACCAAGGATTATAACTGAAGAAGTCAAAGATACCCAATTAAGTCATTTCTAAATAA
ACTCACTGAAGATAAAACGGTCTTTACGAGGAACATGGCAAGAACAATAAAATGGTCTATTGGC
AGAGTTATCATACTTTTGAGAGAAAGGCTCATTTAGTGGTAATGCAATGAGTAAGTTCCCTTTA
CCTGGCATAAATTATACGTGAAGCTATCGTAGTTATCTATAACTATGATTGGTCTAGTATCTTG
CTTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCTTT
TGCTTCAGAGTTCTTGCGGGTCCACTAGTAACTC
						
					

			
		

Sequences
Splice junction sequence	TGCTTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCT TTTGCTTCAGAGTTCTTGCGGGTCCACTAGTAACTCtttgggagaccagaaaacagtgttccat caagtttctcctcatagtgaacaagggatcctttcccatgcacaactccataaggagaacgaac aaccttcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 481 Transcript exons: 29069118-29069217,29069311-29069421,29069548-29069585,29 069684-29069754,29070719-29070879 TTTGGGAGACCAGAAAACAGTGTTCCATCAAGTTTCTCCTCATAGTGAACAAGGGATCCTTTCC CATGCACAACTCCATAAGGAGAACGAACAACCTTCCCTCCAAATGCCTCCCCAATACACTGCAA ACCCATGCAAACCCCAAACAAAGGTGTAGAAGGTCCAAGATCTTGAACTGTTTGCAATGATATT CCTGAATCTTGAGGTGTGCCAGGGCCAGGGGAGATGAGTATTCCTCTAGGAGAAATCTTCTTAA TTTCTTCCACGGTGATATCATCATTGCGGTACACCTCAAAGTTAGCTCCCACCTCACCCATGTA CTGGCATAAATTATACGTGAAGCTATCGTAGTTATCTATAACTATGATTGGTCTAGTATCTTGC TTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCTTTT GCTTCAGAGTTCTTGCGGGTCCACTAGTAACTC
Genomic sequence	TTTGGGAGACCAGAAAACAGTGTTCCATCAAGTTTCTCCTCATAGTGAACAAGGGATCCTTTCC CATGCACAACTCCATAAGGAGAACGAACAACCTTCCCTACAAATGTGCAGCAGATTTTCATGAA GCAACAGGAAGAAAGGGTTAAGTCTAAATGCAGTACTTAAATGAAGAACTTCTGCATGTACGAA CCTCCAAATGCCTCCCCAATACACTGCAAACCCATGCAAACCCCAAACAAAGGTGTAGAAGGTC CAAGATCTTGAACTGTTTGCAATGATATTCCTGAATCTTGAGGTGTGCCTGCACTTTCAAAAGA AAAAGGAGGAAAATCTTAGGCTTGCCATGCAACAGAGTGTAATTACATTGAGCACTATATTATC TCATATGCTATGAATGGAATTGCAAACAGCAAATAGAAATGCTGACCAGGGCCAGGGGAGATGA GTATTCCTCTAGGAGAAATCCTGTGGAACAAGCAAAATGCTGCAGGTGATTTTCTTGATAGAAA TCAGAAAATTAGTGTGCGAATTTGGACTAACAAGTAACAAGGATGTTTACTAACTTCTTAATTT CTTCCACGGTGATATCATCATTGCGGTACACCTCAAAGTTAGCTCCCACCTCACCCATGTACTG CAAACAGAGAAATTCTATAATGTTCACTGCAATCCAGCTGAAGTCATTTATTATGCTAATATGT AACAGCCTATTCATTTAGATTCTAATGAGTTTCTTTTTGCATATTTTGCAAGTCGGATATCATT TTTACATTCACATATAACATTATTAATTGATGGCAGGTTTGTGATCCTTAGTTTCTGTTGATTT AGGCAGGTCAAGATCTTCAATCCTAATTTATTTTTATTTTCTTCTACAATATCTTCCGTTCTGA ATCTGGAATCCTAAATTTTTCCATTCTAATTTATTAGAAAGAAGTAATGAAATGCAAAAGACCT GCATTAGCAATAAAGATAATACACTTGGTTTCTGACCGCTCAAAAGGAACTTAATTAGGACATG TATTAAAGTTATAGAACTGACTTGGAAATTATAGATGAATATTTGCTTGAGGAATAAACTCCAG GTTCGTATCATTCAGTCAGTAATTTATCCTTTTAGCATGGTCTAGAGTTGTTTTCTGATTTCCA TGAAACCGAGTTTGTTTGATGCGCCATAGAACTAAGATTGATGTATGCTATGCCATACTACAAA TTGATTTACAACGTGTCCTTTGTTTGTTGATGTGATTAATCAACAAAGACAATGGTTTATTCTG CTAGAAAAGCCAATTAGATATATTTCTCTGTGAAGCTACAATTATCCATCAAGCACTTTGGATT TTATGAAACATCAAACAGGATATTCTCGTTTTGTTAATCATTTGCATGGTTCAAACACTAAATA AAGGTGTTACCAAGGATTATAACTGAAGAAGTCAAAGATACCCAATTAAGTCATTTCTAAATAA ACTCACTGAAGATAAAACGGTCTTTACGAGGAACATGGCAAGAACAATAAAATGGTCTATTGGC AGAGTTATCATACTTTTGAGAGAAAGGCTCATTTAGTGGTAATGCAATGAGTAAGTTCCCTTTA CCTGGCATAAATTATACGTGAAGCTATCGTAGTTATCTATAACTATGATTGGTCTAGTATCTTG CTTTACTCCATCAAATGCGTTTTCACCTTCCACCACAGAAACAGCACTCTTAGCAACAAGCTTT TGCTTCAGAGTTCTTGCGGGTCCACTAGTAACTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.213270479

Conservation Information
Conserved circRNAs	NA
PMCS	0.213270479

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							29070763-29069395(+)
29069716-29070872(-)
29069753-29070872(-)
						
						Potential amino acid sequence
						
							MIGLVSCFTPSNAFSPSTTETALLATSFCFRVLAGPLVTLWETRKQCSIKFLLIVNKGSFPMHN
SIRRTNNLPSKCLPNTLQTHANPKQRCRRSKILNCLQ*(+)
MMISPWKKLRRFLLEEYSSPLALAHLKIQEYHCKQFKILDLLHLCLGFAWVCSVLGRHLEGRLF
VLLMELCMGKDPLFTMRRNLMEHCFLVSQRVTSGPARTLKQKLVAKSAVSVVEGENAFDGVKQD
TRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISPGPGTPQDSGIS
LQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYEEKLDGTLFSGLPKSY
*(-)
MGEVGANFEVYRNDDITVEEIKKISPRGILISPGPGTPQDSGISLQTVQDLGPSTPLFGVCMGL
QCIGEAFGGKVVRSPYGVVHGKGSLVHYEEKLDGTLFSGLPKSY*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	29070763-29069395(+) 29069716-29070872(-) 29069753-29070872(-)
Potential amino acid sequence	MIGLVSCFTPSNAFSPSTTETALLATSFCFRVLAGPLVTLWETRKQCSIKFLLIVNKGSFPMHN SIRRTNNLPSKCLPNTLQTHANPKQRCRRSKILNCLQ(+) MMISPWKKLRRFLLEEYSSPLALAHLKIQEYHCKQFKILDLLHLCLGFAWVCSVLGRHLEGRLF VLLMELCMGKDPLFTMRRNLMEHCFLVSQRVTSGPARTLKQKLVAKSAVSVVEGENAFDGVKQD TRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISPGPGTPQDSGIS LQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYEEKLDGTLFSGLPKSY (-) MGEVGANFEVYRNDDITVEEIKKISPRGILISPGPGTPQDSGISLQTVQDLGPSTPLFGVCMGL QCIGEAFGGKVVRSPYGVVHGKGSLVHYEEKLDGTLFSGLPKSY*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0718000_circ_g.1

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