Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G04990_circ_g.1 |
ID in PlantcircBase | ath_circ_000751 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 1420104-1420373 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G04990 |
Parent gene annotation |
Zinc finger CCCH domain-containing protein 3 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 16 |
Tissues | root, leaf, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G04990.4:1 AT1G04990.1:1 AT1G04990.3:1 AT1G04990.6:1 AT1G04990.5:1 AT1G04990.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.366912393 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1420266-1420106(-) |
Potential amino acid sequence |
MSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMGEKPCPYYLR TGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPILV SPSQGFLPPQGWAPYMGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYA SGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMGEKPCPYYLRTGTCRFGVACKF HHPQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGW APYM(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |