Detail information of BGIOSGA036619_circ_g.2


General Information
CircRNA Name BGIOSGA036619_circ_g.2
ID in PlantcircBase osi_circ_003291
Alias 12:2817749|2818849
Organism Oryza sativa ssp. indica
Position chr12: 2817749-2818849  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA036619
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036619_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA036619-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCAGACGGTCTCCAAAACTCAGCTGCACTATGGTTGCATCACGGTCTGAGTCTTGATCTAT
CAGAACAACTGGCTGTGGAATTGCATCATCAGATGTcttcttttaggtccatcatcttcaacaa
ttacatgtgttacaacatcaacatcaacctgagagtttaaagaacaaataaatcacgttcatgc
taaagtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTTTAGGTCCATCATCTTCAACAATTACATGTGTTACAACATCAACATCAACCTGAGAGT
TTAAAGAACAAATAAATCACGTTCATGCTAAAGTTAATGGAATACAAAATTAACAGCATAACAA
AACACTCAGGAACCTAACTTTTTTACTGTGTTAAAATTGAGGAAAACACACAACTTTAAAATTG
AGAAGATGCTTGATAACAGAGCATGGGTGGTGAACAAGCAGAATGAGAACATCCAATGAACTCA
CCTTCTTCTCAGGAGCTTTTATTCCAAAAAATTCACCCATGGCTAAATTCTCACTTGATTCCTA
CATGCATATCAACCAGACAAATGAGTTAGTTTGATACTTTGATTCATAAAAACAAGAACGGATC
CAAAATTACTAACGGTAGAAGTTCTAAACACAAGTAAAAGGATGTGACGCTCGGAACATACAGG
ATGATACTGCAGAAGGTTGTTAATAACTGTTAGCCGTATCTTTTCCAATGTGTCAGGGTCCTCA
ACTTTGCGCCCCCTAGATACAGACAGAAGAGGGGGAAAAAGATAATATTAGACATGAAATTATC
CAAATCACCAAAACAATATAAGAAGCATGATAGTTGCTAAATGTTTTAATCTCGTATTGTGTTT
AGTGCACATGTAAACTATTAGTATGGTACTTTGATAAATATGTGGATTCAATGAGAAAATACAC
CCTCTACTTCAAATATAAACTAAACAGCATGACAAAATGCAGCACACAGAAAGTGGCGTGCACC
CACGATCGCATGATGTGGAACTTTGTTTGTGTGACAGCTGATTCAGTTGACACACTTCCTTTCG
TCACATCAAGGCCCAGGTCCCCCGAGTGCCTTCATCTGCAAACAGTGAATACCAGGACAAAATA
ATTTACTGATACAACAAAAATTACTAATTACGAAATATATCTTAAACAAGATCAGATCAAATAG
AGCACCCATAGCATAGGAAAATTATACCGTGTCAAGTAGTGCCCCCAGACGGTCTCCAAAACTC
AGCTGCACTATGGTTGCATCACGGTCTGAGTCTTGATCTATCAGAACAACTGGCTGTGGAATTG
CATCATCAGATGT
Conservation Information
Conserved circRNAs osa_circ_010498*
PMCS
Functional Information
Coding potential Y
Potential coding position 2818046-2818815(-)
2818847-2818047(+)
Potential amino acid sequence MGEFFGIKAPEKKVDVDVVTHVIVEDDGPKRRHLMMQFHSQLF*(-)
MSSFRSIIFNNYMCYNININLLLRSFYSKKFTHG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021