Plant Circular RNA Database

Detail information of Chr2_circ_ig.25

			
						 General Information
					
						CircRNA Name
						Chr2_circ_ig.25
					
						ID in PlantcircBase
						csa_circ_000952
					
						Alias
						Chr2:8334092_8337120
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr2: 8334092-8337120  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Csa2G123620_circ_g.1 Chr2_circ_ig.26 Csa2G123620_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Chr2_circ_ig.25
ID in PlantcircBase	csa_circ_000952
Alias	Chr2:8334092_8337120
Organism	Cucumis sativus
Position	chrChr2: 8334092-8337120 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	igg-circRNA
Identification method	CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Csa2G123620_circ_g.1 Chr2_circ_ig.26 Csa2G123620_circ_g.2
Support reads	NA
Tissues	leaf,root
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGGTAAGAGATGGTGTTTTGTTTTTTCAGGCTGTTGATCTGAGTGTGGATTTGAGTGCTGCTAG
TGCTGCAGAAGAATGACAAAGCCTCGGAATGCTTTTaaagtatggactggatgacaacactatt
gacttcattggtcatgcattggcacttcatagagatgatcgctatcttgatctgcctgcattag
atacagta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AAAGTATGGACTGGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGAT
GATCGCTATCTTGATCTGCCTGCATTAGATACAGTAAAGAGAATGAAGGTGACAACCATCTAGA
CTTGCTAATTTTTTCACTTTTTTTGTCGTATGTTATGCATTAAATATCTCGTCTCCCTTCTTTT
ATTTGTGTGATAGCTTTATGCGGAGTCTCTTGCACGCTTTCAAGGAGGGTCTCCATACATCTAT
CCTCTATATGGACTAGGAGAGCTTCCACAGGTCTTTATTTCTCTTGTCCTCCCTATTTACCTAC
TATTGCATTATTAGCTAACTTTATTTATCTTTTTGTATATCTGCCTTATACTGCTTAATTTAAT
CTATATTCACTCCCTCTTATCTTATCTTATCTTATTTTTTTTACAGGCATTTGCTCGCCTCAGT
GCTGTCTACGGTGGAACATATATGTTAAACAAACCTGAGTGCAAGGTTGTCTTTTAAATTTGAC
TATCTGATTTCATATTGGACTATATTTTTCTTTTACTTCAAATCACGTCATTGCTTTTTTCACC
ATTTATTTGGGGTTGTCTTGGGTAAAAACATCTCAGAAACTGATGTATCTCTCTTTGAAGTAAA
TTGGGTTGGTCTTTGAATTCTAGGTGGAATTTGATGATGAAGGAAAAGTTATTGGTGTCACTTC
AGAAGGGGAAACTGCCAAGTGCAAAAAGGTTGTCTGCGATCCTTCCTACTTGTCGAACAAGGTA
AGGGATTTATTGTCATACCAAATCATTCCATGTTTTTTGATTGGTTTCATTTTATGACAGGTTT
TGGACATGCAAATCATCTATAATATGAGTCTTTTTCTTTTTCTTTTCTTGACCCTATACTTTAT
GTTGTACTTTTCTTCTCATTCAACGATTTTATCAGTAAATGGAGCCCTAATATTTATGATAGCT
TCATCTCATTGTTTGATAGCCTTCACCCCGTCAAGGAATCCATGAATGATGATTTCTCTAAACC
AAATTCATTATGTCTTTCTTTTTAAAGTTACGAAGCCTGAAGAATGTGATGAAAACGTAGTTCT
TCCCAACTTATATGATGTTGTATATCTTGAAACAGGTCAGGAAGGTTGGTAAGGTTGCTAGGGC
TATTGCCATAATGAGCCACACAATACCAAACACCAATGATTCCCATTCGGTGCAGATTATTATA
CCGCAGAAGCAGTTGGGTCGCAGATCGGACATGTAAGTTATTGTATAGTGCTTATAGTAAGAGT
AACTAAAATTCCATTATGCGCTTCTCCATCATTCAATTGATGTTCTGAAATTAGGTAGGGTGGT
TTTAGGAGAAGGCAGGTATTTTAGTTTTTTTTTGTCAATTCCATCTGTTTTGGGGATTGCTCTT
TTGTTTCCATCTGTGACAATTAAGATAGCTTTGACAGATTTCCAGAAAAGTCTCCATGACTATT
TCTCCAATTGTTTTTTTCCAATAATTTAATGGCTTGGCTATGTCTTATCTAATGGTACAAAATT
TCAAATGGAAGATTTGAAATTCTTTTGATCCTTTTTGGAATATACAACATACACATCTGTTTCA
TATAAATACCAAAGAAAAGTAAAAATTTGCAGTTCTATTGCTTTATGACCAGAATTCACTCCAC
TTTTGGTTTTTCCAATAATTTAATACTCACAACCTGCCTTCTACTAGCTTGGCTAGTTGTCATC
TAATGACATAAAAGGAAGACTTGAAGATTTACTGCATATGACCAAAATTCATTTTTTTTTCTGA
TCTGTCGCTGAGTTTCAGATTCAATTATCTGTGTTATAGAGGGGGTTAAGCATTGGCATAGATA
TTTTTGAAGAATTAAAAATCTTTGTAGTGCTTTGCATATGCCAGTTTGTTGGTTGAGGTAGAAC
AAGTTTATCTACGTTGCTTTTACCATATAATTGGGCACTTTGTTTGTACTTGACTAGTGAGTTT
TCATTTTAGGAGTTTTGTTAAGTGTACCTCAACCCTTCTAAACCCTTAATCAACTATAACTGTG
CAAGTATTAGTGTCCAAATGGCTTTGTTGAAACTTCGATACTATTTTTGAGTGATGCTCTTGGA
ATCGGTTGTGTTTTACCCCATCTTCTAAAATCACATTGTTTTTAAATCTCTGCTCTGTTTTGAC
AGGTATGTTTTTTGTTGCTCTTACTCTCACAACGTTGCTCCAAGAGGCAAGTTTATTGCTTTTG
TTACAACAGAAGCTGAGACTGACCATCCCGAGTCAGAACTAAAACCAGGAATTGACCTGCTGGG
GGCCGTTGATGAGATATTTTTTGATACATATGATAGATACGAGCCAGTCAATGAACCATCTCTG
GACAATTGCTTTATATCTATGGTATGTATTAACATTGAAAGCTTTTTCTCCTTCCTTCTTCCTC
TGCATGCACGTTTATATGAGTGTGCATGTGTATGAACTAATTTGTATGCACACTTTCAACAGAG
TTATGATGCTACAACACATTTCGAATCAACTGTTGTTGATGTGCTCAACATGTATACAATGATA
ACTGGCAAGGTGAGGATCATTTTCCCCAACTCTTTTAAAACTTCAAATTTTGAACATTTTTGTT
GTAGAGAATAAACTTTATATAGTGTCTCAATATTTTTTCCGATCATAAAGTTTAAGCTATGGTG
GTGACTTGCCTAGAATTTAATATACTACAAGTTACTTTAACAACTAAATATAGTAGAGTTAAAC
AGTTGTTCATTAAGCAGTGGAAACTTAAAGATGTTAAAAAATAGTACTAATAATAATTCGTATT
TCATTTGTGGTTAAATTTTTTTGTATTGACCACGGGCATCTGATGCGTAGTGAATCAGAGTTTA
ATCTTGAGTAGGGTCTGGTGTCTGTATTAGTTTGTGGTAGTGGGAAAAGTGGTAAGAGATGGTG
TTTTGTTTTTTCAGGCTGTTGATCTGAGTGTGGATTTGAGTGCTGCTAGTGCTGCAGAAGAATG
ACAAAGCCTCGGAATGCTTTT
						
					

			
		

Sequences
Splice junction sequence	TGGTAAGAGATGGTGTTTTGTTTTTTCAGGCTGTTGATCTGAGTGTGGATTTGAGTGCTGCTAG TGCTGCAGAAGAATGACAAAGCCTCGGAATGCTTTTaaagtatggactggatgacaacactatt gacttcattggtcatgcattggcacttcatagagatgatcgctatcttgatctgcctgcattag atacagta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AAAGTATGGACTGGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGAT GATCGCTATCTTGATCTGCCTGCATTAGATACAGTAAAGAGAATGAAGGTGACAACCATCTAGA CTTGCTAATTTTTTCACTTTTTTTGTCGTATGTTATGCATTAAATATCTCGTCTCCCTTCTTTT ATTTGTGTGATAGCTTTATGCGGAGTCTCTTGCACGCTTTCAAGGAGGGTCTCCATACATCTAT CCTCTATATGGACTAGGAGAGCTTCCACAGGTCTTTATTTCTCTTGTCCTCCCTATTTACCTAC TATTGCATTATTAGCTAACTTTATTTATCTTTTTGTATATCTGCCTTATACTGCTTAATTTAAT CTATATTCACTCCCTCTTATCTTATCTTATCTTATTTTTTTTACAGGCATTTGCTCGCCTCAGT GCTGTCTACGGTGGAACATATATGTTAAACAAACCTGAGTGCAAGGTTGTCTTTTAAATTTGAC TATCTGATTTCATATTGGACTATATTTTTCTTTTACTTCAAATCACGTCATTGCTTTTTTCACC ATTTATTTGGGGTTGTCTTGGGTAAAAACATCTCAGAAACTGATGTATCTCTCTTTGAAGTAAA TTGGGTTGGTCTTTGAATTCTAGGTGGAATTTGATGATGAAGGAAAAGTTATTGGTGTCACTTC AGAAGGGGAAACTGCCAAGTGCAAAAAGGTTGTCTGCGATCCTTCCTACTTGTCGAACAAGGTA AGGGATTTATTGTCATACCAAATCATTCCATGTTTTTTGATTGGTTTCATTTTATGACAGGTTT TGGACATGCAAATCATCTATAATATGAGTCTTTTTCTTTTTCTTTTCTTGACCCTATACTTTAT GTTGTACTTTTCTTCTCATTCAACGATTTTATCAGTAAATGGAGCCCTAATATTTATGATAGCT TCATCTCATTGTTTGATAGCCTTCACCCCGTCAAGGAATCCATGAATGATGATTTCTCTAAACC AAATTCATTATGTCTTTCTTTTTAAAGTTACGAAGCCTGAAGAATGTGATGAAAACGTAGTTCT TCCCAACTTATATGATGTTGTATATCTTGAAACAGGTCAGGAAGGTTGGTAAGGTTGCTAGGGC TATTGCCATAATGAGCCACACAATACCAAACACCAATGATTCCCATTCGGTGCAGATTATTATA CCGCAGAAGCAGTTGGGTCGCAGATCGGACATGTAAGTTATTGTATAGTGCTTATAGTAAGAGT AACTAAAATTCCATTATGCGCTTCTCCATCATTCAATTGATGTTCTGAAATTAGGTAGGGTGGT TTTAGGAGAAGGCAGGTATTTTAGTTTTTTTTTGTCAATTCCATCTGTTTTGGGGATTGCTCTT TTGTTTCCATCTGTGACAATTAAGATAGCTTTGACAGATTTCCAGAAAAGTCTCCATGACTATT TCTCCAATTGTTTTTTTCCAATAATTTAATGGCTTGGCTATGTCTTATCTAATGGTACAAAATT TCAAATGGAAGATTTGAAATTCTTTTGATCCTTTTTGGAATATACAACATACACATCTGTTTCA TATAAATACCAAAGAAAAGTAAAAATTTGCAGTTCTATTGCTTTATGACCAGAATTCACTCCAC TTTTGGTTTTTCCAATAATTTAATACTCACAACCTGCCTTCTACTAGCTTGGCTAGTTGTCATC TAATGACATAAAAGGAAGACTTGAAGATTTACTGCATATGACCAAAATTCATTTTTTTTTCTGA TCTGTCGCTGAGTTTCAGATTCAATTATCTGTGTTATAGAGGGGGTTAAGCATTGGCATAGATA TTTTTGAAGAATTAAAAATCTTTGTAGTGCTTTGCATATGCCAGTTTGTTGGTTGAGGTAGAAC AAGTTTATCTACGTTGCTTTTACCATATAATTGGGCACTTTGTTTGTACTTGACTAGTGAGTTT TCATTTTAGGAGTTTTGTTAAGTGTACCTCAACCCTTCTAAACCCTTAATCAACTATAACTGTG CAAGTATTAGTGTCCAAATGGCTTTGTTGAAACTTCGATACTATTTTTGAGTGATGCTCTTGGA ATCGGTTGTGTTTTACCCCATCTTCTAAAATCACATTGTTTTTAAATCTCTGCTCTGTTTTGAC AGGTATGTTTTTTGTTGCTCTTACTCTCACAACGTTGCTCCAAGAGGCAAGTTTATTGCTTTTG TTACAACAGAAGCTGAGACTGACCATCCCGAGTCAGAACTAAAACCAGGAATTGACCTGCTGGG GGCCGTTGATGAGATATTTTTTGATACATATGATAGATACGAGCCAGTCAATGAACCATCTCTG GACAATTGCTTTATATCTATGGTATGTATTAACATTGAAAGCTTTTTCTCCTTCCTTCTTCCTC TGCATGCACGTTTATATGAGTGTGCATGTGTATGAACTAATTTGTATGCACACTTTCAACAGAG TTATGATGCTACAACACATTTCGAATCAACTGTTGTTGATGTGCTCAACATGTATACAATGATA ACTGGCAAGGTGAGGATCATTTTCCCCAACTCTTTTAAAACTTCAAATTTTGAACATTTTTGTT GTAGAGAATAAACTTTATATAGTGTCTCAATATTTTTTCCGATCATAAAGTTTAAGCTATGGTG GTGACTTGCCTAGAATTTAATATACTACAAGTTACTTTAACAACTAAATATAGTAGAGTTAAAC AGTTGTTCATTAAGCAGTGGAAACTTAAAGATGTTAAAAAATAGTACTAATAATAATTCGTATT TCATTTGTGGTTAAATTTTTTTGTATTGACCACGGGCATCTGATGCGTAGTGAATCAGAGTTTA ATCTTGAGTAGGGTCTGGTGTCTGTATTAGTTTGTGGTAGTGGGAAAAGTGGTAAGAGATGGTG TTTTGTTTTTTCAGGCTGTTGATCTGAGTGTGGATTTGAGTGCTGCTAGTGCTGCAGAAGAATG ACAAAGCCTCGGAATGCTTTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.115675586

Conservation Information
Conserved circRNAs	NA
PMCS	0.115675586

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Chr2_circ_ig.25

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