Detail information of BGIOSGA008317_circ_g.6


General Information
CircRNA Name BGIOSGA008317_circ_g.6
ID in PlantcircBase osi_circ_011803
Alias Chr02:19638222_19638588(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 20285286-20285652  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA008317
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008317_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA008317-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCAAGGATTCCGTTGTGGCTGGTTTCCAGTGGGCATCAAAGGAGGGTGCTCTGGCTGAGGAG
AACATGCGTGGTATCTGCTTTGAGGTGTGCGATGTTgaagtcgtgccgtactgttatgagcaag
tccccgaacaagcacaaccgtctctacatggaagctcgccccttggaggagggattggctgagg
ccattgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTCGTGCCGTACTGTTATGAGCAAGTCCCCGAACAAGCACAACCGTCTCTACATGGAAGCT
CGCCCCTTGGAGGAGGGATTGGCTGAGGCCATTGATGACGGTCGTATTGGCCCACGTGATGATC
CCAAGGTGCGCTCCAAGATCCTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCAAAGAAGAT
TTGGTGTTTTGGACCTGAGACAACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAG
TATCTGAATGAAATCAAGGATTCCGTTGTGGCTGGTTTCCAGTGGGCATCAAAGGAGGGTGCTC
TGGCTGAGGAGAACATGCGTGGTATCTGCTTTGAGGTGTGCGATGTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021