Detail information of BGIOSGA016716_circ_g.2


General Information
CircRNA Name BGIOSGA016716_circ_g.2
ID in PlantcircBase osi_circ_014537
Alias Chr04:25652055_25652347(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23685437-23685729  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016716
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA016716-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGCTGCTATGAATGCTATGCAGGTCCTAACCACAACTACAACTGCATACCATGTTCAAAGC
AGGAAGACCAGCAAAATGGATCATGGTTTGCTCAAGggcggcaatgtgccaaggaggtgtcaga
tttactaatgggcgctgccgatggtgccaaggctctgattgatgccagtgatcgcttgatactc
tatattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGGCAATGTGCCAAGGAGGTGTCAGATTTACTAATGGGCGCTGCCGATGGTGCCAAGGCTCT
GATTGATGCCAGTGATCGCTTGATACTCTATATTGAAATCGCGAGACTTTTTGGTACACTTGGT
TATAAACGCAAGGCGGCCTTTTTTTCAAGACAAGTTGCGCAATTGTATCTCCAGCAGGATAATG
CATATGCTGCTATGAATGCTATGCAGGTCCTAACCACAACTACAACTGCATACCATGTTCAAAG
CAGGAAGACCAGCAAAATGGATCATGGTTTGCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021