Detail information of AT2G40120_circ_g.3


General Information
CircRNA Name AT2G40120_circ_g.3
ID in PlantcircBase ath_circ_017590
Alias 2:16756089-16756368
Organism Arabidpsis thaliana
Position chr2: 16756089-16756368  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G40120
Parent gene annotation Hypothetical Ser-Thr protein kinase
Parent gene strand -
Alternative splicing NA
Support reads 1/2/2
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G40120.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAATGCAGCAGAACCAATGTATTCCGTAATGTAATATCTTCCTCCAATCACAGTGTTTATC
ACAATTGGTAGATCCTTGTTCTCTTCGAATCCCGTCttggtggtagaagtaatcatagaggcgc
aagatatgatgttcatcagcaggatcatgcttattgacatgtttcaatagcttgatctcatcta
aactctga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 280
Transcript exons: 16756089-16756368
TTGGTGGTAGAAGTAATCATAGAGGCGCAAGATATGATGTTCATCAGCAGGATCATGCTTATTG
ACATGTTTCAATAGCTTGATCTCATCTAAACTCTGATCAAAGAAATCTTTATCGTTCTTAATAA
TCTTGAGGCAAACATCAACCCCGTTGTGTAGATCCTGTGCCTGAACCACCTTGCTAAATGCAGC
AGAACCAATGTATTCCGTAATGTAATATCTTCCTCCAATCACAGTGTTTATCACAATTGGTAGA
TCCTTGTTCTCTTCGAATCCCGTC

Genomic sequence TTGGTGGTAGAAGTAATCATAGAGGCGCAAGATATGATGTTCATCAGCAGGATCATGCTTATTG
ACATGTTTCAATAGCTTGATCTCATCTAAACTCTGATCAAAGAAATCTTTATCGTTCTTAATAA
TCTTGAGGCAAACATCAACCCCGTTGTGTAGATCCTGTGCCTGAACCACCTTGCTAAATGCAGC
AGAACCAATGTATTCCGTAATGTAATATCTTCCTCCAATCACAGTGTTTATCACAATTGGTAGA
TCCTTGTTCTCTTCGAATCCCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.579890814
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020