Detail information of AT1G58025_circ_g.1


General Information
CircRNA Name AT1G58025_circ_g.1
ID in PlantcircBase ath_circ_007859
Alias NA
Organism Arabidpsis thaliana
Position chr1: 21459371-21461821  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT1G58025
Parent gene annotation DNA-binding bromodomain-containing protein
Parent gene strand -
Alternative splicing AT1G58025_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G58025.3:4
AT1G58025.5:4
AT1G58025.4:4
AT1G58025.1:4
AT1G58025.2:4
AT1G58025.6:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTCCCTTTCTTATGTCCTCTTTTACGCTTCATACTCTTCAACGATACTATCAACCCCGTA
CGTAGATATCACACAGAGAGAAGCTAGAAGAGACTCccatggcgtttatgactcttctgctttg
tggatgcctttccaccatcttctgtattttctgctggtaaaaaaagaaaccaaataagctaaat
cgtacgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1098
Transcript exons: 21459371-21459428,21460034-21460268,21460901-21460978,21
461095-21461821
CCATGGCGTTTATGACTCTTCTGCTTTGTGGATGCCTTTCCACCATCTTCTGTATTTTCTGCTG
ATTGCTCAGTATACAACCCTGCTGAAGTCCAGTACTTCATGAAATTTTTCTTCACTCGCTTCAT
CAGATCCACAATATAATCACCTTTCTTATTGTACTTGGAACAGTTATTCCAAATGTAGTTGACA
TCCTTGTAAACATCCTCAGAATTCATATACTTGTTGCCTTTCTCAAAATTGTTGCATATTGTTC
CAAAATCCATAGGTGTCTTGATAATATCGAAATAGTCAGGAATTCCAAGAGCTTCTGGATTGAC
AGGAACATTAAAAGGATCAGCAGCCTCCATCTTCATAATCTTCTTGATCACAATAAGAGAATCT
TCCAGTTCTTGCTTATTGTATCGTAAATTTTGATCAGTCTTCTTCTCCTCTTTCTGCAAAGAAA
TCGTTGCAATTTCCGCCTCTTTCTTACTAGCTTGAGAATTCTCCTCAGACGTTTTCGTATCCTT
CTGACCTACTACCACATCCTGAACCTTGACAGTATCAGTAGCACTCTTCTCAGTAACCGAGCTA
GACCCATCAACCGCCTTCGAAGACTTTATCCTTATACCTTTAGTTTTCCTGTAAACATTCAGAA
ACACCGGCTTCCTCTCAGGCAAACGAGGAACAAATTCCTCCTTTTTCTCAACAGGCACAACAGG
TTTTTCTAACACCGCTTGAGAACTACTCTTATCGATATCATCACGCAATGTCTCATTGGGTTCA
GGTGCTTTCGAAGTCTTCAATTTAACCTTAACACGCGCAACAGACTTGGCCGCTATATTATCAG
CTAGATCTACACTTCCAGCAATAGGTGAAGGAGCATCAACCTCCATTTTAGATTCAAGTTCACT
ATTCTCACACTCAACAGGAGCTTCAGAACTATGCTCAGAGGTTTGATTCTCCGCGTTTTCAGTT
GACTCGTTCAAGTTCCCTTGTTCATTGATAGTCTTAGACTTCTTCCCTTTCTTATGTCCTCTTT
TACGCTTCATACTCTTCAACGATACTATCAACCCCGTACGTAGATATCACACAGAGAGAAGCTA
GAAGAGACTC

Transcript length: 1101
Transcript exons: 21459371-21459431,21460034-21460268,21460901-21460978,21
461095-21461821
CCATGGCGTTTATGACTCTTCTGCTTTGTGGATGCCTTTCCACCATCTTCTGTATTTTCTGCTG
CTGATTGCTCAGTATACAACCCTGCTGAAGTCCAGTACTTCATGAAATTTTTCTTCACTCGCTT
CATCAGATCCACAATATAATCACCTTTCTTATTGTACTTGGAACAGTTATTCCAAATGTAGTTG
ACATCCTTGTAAACATCCTCAGAATTCATATACTTGTTGCCTTTCTCAAAATTGTTGCATATTG
TTCCAAAATCCATAGGTGTCTTGATAATATCGAAATAGTCAGGAATTCCAAGAGCTTCTGGATT
GACAGGAACATTAAAAGGATCAGCAGCCTCCATCTTCATAATCTTCTTGATCACAATAAGAGAA
TCTTCCAGTTCTTGCTTATTGTATCGTAAATTTTGATCAGTCTTCTTCTCCTCTTTCTGCAAAG
AAATCGTTGCAATTTCCGCCTCTTTCTTACTAGCTTGAGAATTCTCCTCAGACGTTTTCGTATC
CTTCTGACCTACTACCACATCCTGAACCTTGACAGTATCAGTAGCACTCTTCTCAGTAACCGAG
CTAGACCCATCAACCGCCTTCGAAGACTTTATCCTTATACCTTTAGTTTTCCTGTAAACATTCA
GAAACACCGGCTTCCTCTCAGGCAAACGAGGAACAAATTCCTCCTTTTTCTCAACAGGCACAAC
AGGTTTTTCTAACACCGCTTGAGAACTACTCTTATCGATATCATCACGCAATGTCTCATTGGGT
TCAGGTGCTTTCGAAGTCTTCAATTTAACCTTAACACGCGCAACAGACTTGGCCGCTATATTAT
CAGCTAGATCTACACTTCCAGCAATAGGTGAAGGAGCATCAACCTCCATTTTAGATTCAAGTTC
ACTATTCTCACACTCAACAGGAGCTTCAGAACTATGCTCAGAGGTTTGATTCTCCGCGTTTTCA
GTTGACTCGTTCAAGTTCCCTTGTTCATTGATAGTCTTAGACTTCTTCCCTTTCTTATGTCCTC
TTTTACGCTTCATACTCTTCAACGATACTATCAACCCCGTACGTAGATATCACACAGAGAGAAG
CTAGAAGAGACTC

Genomic sequence CCATGGCGTTTATGACTCTTCTGCTTTGTGGATGCCTTTCCACCATCTTCTGTATTTTCTGCTG
GTAAAAAAAGAAACCAAATAAGCTAAATCGTACGCACAATTACACAGGCCAAAATGCATAGCTA
ACATATACAATGCAAATAGTGCATTGTTAACATTTCTGCAGATTGATATTTCTCTTGATAATTT
CTTCTCGAATGGAATTCTTTCATTAATGGTAACTCACTTCCTACAAATAGGTTTATGCATCTTT
AATTCTGAAATTCCATAAGAGAATTAAAAGTGACAAACAAAATCTAAACATAAGGCAGTAGCCG
GAAAGTGTAGCCAAAAGGTTACACACAACTGCATTCAGGATTAACTTATCCATCTAACAGATCT
GGATGGATACATCAGAAAAACTGATTTTTTAAACAAAGTTAGTTTTCTTATACTTTTATTCCTA
AAACGGAGCTACATGCATTTCAACAATGACATTTCACTAGATAACATCAGCACTGACCATTGTC
AGACGCACACAGAATATTTTCATAATGTCTAATATATGTATGCCAAGGGAAACTAGAAATGTAA
CTATCCATGAAGACAGTTGTGGCTACCAACTAAGCAATGCTTCACCACAAGAGTTTAAACATGG
AGAAGATAAAATTTTAGTAATACCTGCTGATTGCTCAGTATACAACCCTGCTGAAGTCCAGTAC
TTCATGAAATTTTTCTTCACTCGCTTCATCAGATCCACAATATAATCACCTTTCTTATTGTACT
TGGAACAGTTATTCCAAATGTAGTTGACATCCTTGTAAACATCCTCAGAATTCATATACTTGTT
GCCTTTCTCAAAATTGTTGCATATTGTTCCAAAATCCATAGGTGTCTTGATAATATCGAAATAG
TCCTGATCACATAATCAGAAAACAGTCTCACGTGTTAGACATCAATTCTGAAATCCCTTTAAAA
GATGAAAGATGCTGGAGCCTGGAGATTGGAAAAGTATAGGAGAAATTATCCAGTAAAAATGTCA
AGTGACAGGGACAAAAAGCCACACTATCCATCTTTGTTGAGCGGCAAAGTTTGTTAAAAACTAT
AAGAAGATGGCAAGTCAAGAATTTCTTTCGATTATCAGCAGTTCATAAAAGGAGAGAGACTTTA
GTTTTTCCAATAACAAAAAGCCAAGGTTATCCCTCAAGGGCAATAGTATGTGTATACTATTACA
ACCAATCTGGTTCACTTATACACAAACTAAAAGAGTATATATGGAAAAAGAAAGATGAGCTAAA
CAATACGACGGGTCCATGTACTGGAGCATTTCTAAGTCTTGTCAATAGAGTTCAAAACGATTTT
TGTTTCTGACTTTGTTCAGAGCTAATTTACCTAGGAAGTTCAACATAAGCATGTAATGGATATA
TGTGAAACGTATCAAGTGTTTAGATGAATGATAGAGCTTTCACAAGCCAAGGTTAATATATAAC
AACAACTCCCAGAATGGTACCTTTAGCCAACAAAGACGAAGCTAATATCTGTACTTACAGGAAT
TCCAAGAGCTTCTGGATTGACAGGAACATTAAAAGGATCAGCAGCCTCCATCTTCATAATCTTC
TTGATCACCTAGAGCAATTTGACACCAACACATAAAAGGTGCATTAGGCGTAATATACAAGTTG
AACTGCTCATACCATGAAAGAATTTAGCAACAATCAAGGGAGATATTAATCTGAGCATACAATA
AGAGAATCTTCCAGTTCTTGCTTATTGTATCGTAAATTTTGATCAGTCTTCTTCTCCTCTTTCT
GCAAAGAAATCGTTGCAATTTCCGCCTCTTTCTTACTAGCTTGAGAATTCTCCTCAGACGTTTT
CGTATCCTTCTGACCTACTACCACATCCTGAACCTTGACAGTATCAGTAGCACTCTTCTCAGTA
ACCGAGCTAGACCCATCAACCGCCTTCGAAGACTTTATCCTTATACCTTTAGTTTTCCTGTAAA
CATTCAGAAACACCGGCTTCCTCTCAGGCAAACGAGGAACAAATTCCTCCTTTTTCTCAACAGG
CACAACAGGTTTTTCTAACACCGCTTGAGAACTACTCTTATCGATATCATCACGCAATGTCTCA
TTGGGTTCAGGTGCTTTCGAAGTCTTCAATTTAACCTTAACACGCGCAACAGACTTGGCCGCTA
TATTATCAGCTAGATCTACACTTCCAGCAATAGGTGAAGGAGCATCAACCTCCATTTTAGATTC
AAGTTCACTATTCTCACACTCAACAGGAGCTTCAGAACTATGCTCAGAGGTTTGATTCTCCGCG
TTTTCAGTTGACTCGTTCAAGTTCCCTTGTTCATTGATAGTCTTAGACTTCTTCCCTTTCTTAT
GTCCTCTTTTACGCTTCATACTCTTCAACGATACTATCAACCCCGTACGTAGATATCACACAGA
GAGAAGCTAGAAGAGACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.22717491
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017