Detail information of AT1G01960_circ_g.1


General Information
CircRNA Name AT1G01960_circ_g.1
ID in PlantcircBase ath_circ_000169
Alias NA
Organism Arabidpsis thaliana
Position chr1: 333905-334178  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT1G01960
Parent gene annotation Brefeldin A-inhibited guanine nucleotide-exchange protein 3
Parent gene strand -
Alternative splicing NA
Support reads 40
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G01960.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGTCAAGTGGAACACTGAAAGCTGCCAACATAGGAGCCCAACAAACCTCAACCATAAATCTG
AGTATAATCACATCCGAGGCTGCATAATAAACTGACctttattgcttcaatgtttttttgcttg
atatcagcaggagagtggagggaagtaaattttgctagtgaagtcacaaaggcatctctgtgcg
tttttaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTATTGCTTCAATGTTTTTTTGCTTGATATCAGCAGGAGAGTGGAGGGAAGTAAATTTTGCT
AGTGAAGTCACAAAGGCATCTCTGTGCGTTTTTAAGGACATTACAGAAGTGACATGGATGGCAT
GATGGAAACCCTCCAGACATAATGTTGTTATTACTGCATCATCACTCTGGTCAAGTGGAACACT
GAAAGCTGCCAACATAGGAGCCCAACAAACCTCAACCATAAATCTGAGTATAATCACATCCGAG
GCTGCATAATAAACTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.427980589
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017