Detail information of orai.006G189100_circ_g.2


General Information
CircRNA Name orai.006G189100_circ_g.2
ID in PlantcircBase gra_circ_000646
Alias Chr06:44606597|44610029
Organism Gossypium raimondii
Position chrChr06: 44606597-44610029  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.006G189100
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.006G189100.2:8
Gorai.006G189100.3:8
Gorai.006G189100.4:3
Gorai.006G189100.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTATCCTTTCCTGATGATGAAAACTATTTGCAGGTTTTTATCCATGATCCTCTTTATAAGTGG
GCTTTATCACCCCTGAAGGCTTTGCAGCGTCAAAAGgttatggaacaattttttggactagtaa
atactttcctacagaatcaccgcgatacatggaaaaggagattagtcatacgtacatacaaggt
acttcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATGGAACAATTTTTTGGACTAGTAAATACTTTCCTACAGAATCACCGCGATACATGGAAAA
GGAGATTAGTCATACGTACATACAAGGTACTTCCTCAATTCTTTTATAACAAGAATGAAATATT
ATTTCACGCTTGTTTAGCTGAAGGTTCATTTTCAATGTGGATCAAAGAATTGGCTTCTTTTTCA
TAATTTTGAAATCTTGGTTTAGATGATGATTAGCTTATAAATTTATTTTTCCTTTTCTGTAGTT
TTGAAAGAACTCTTTTGGGTTTTAATTTTCCTTGGAAAGACTACAAGCATGTCTTCTGGTTGTA
TAGTCATGTATATCTGAATTCTCTTTATTTTACTTGTACTTTTTCCCTGTTCTCCTTCTTTAGA
GGCATCTGATATGGCGTAGAAGGTACTTATATTGATGATGGCATCTATGCAATATTTTTTTTTC
TCTTCAATTGGAATTTCATAAGAGATGCTAGGTTCCCTTGCATTGGTCATACAATTTCACCATT
TTATTAAGTTCTTTCAATTGTTTGCTATAGAGCTCATATGATTAATTTGATTATATACTTGAAA
AAAATGGAGAGAGACAGTGGGGGATTGAGGATTCTTTTTGAAGAACTTGAATGATTATAAGGTT
TTGTTTGATTTTTGGCTCTGTGGTGATTTCACCAAGTAAATCATGGAAGATTAAAAAAGAATTG
CAGTGCTGGCTAGTTCTGTATTTAAGTACATATGTTTGTGCATTTTAATTAAAAATTGATTTCC
TTTCAGAATTATAAATGCATTATTATTGATGAATTAGGTTGTTCCTTTCACTCCAAGTGCTGGT
GTTATTGAATGGGTCGATGGCACACTTCCTCTTGGGGAATATCTTATAGGAAGGTTTGTTAACT
TACAACCGTTCTAGTCCTTAGCATTCCCAGTTGACTGTGAGATAAGACACGAACTTTAATGACT
CAATATCATCAATTTTCAGCAATAGGAATGGCGGTGCACATGGTCGCTATGGAATCGGAGACTG
GTCATTTCTAAAATGCCGAGTACACATGTCAAATGCAAGTTTCTTTCCCTTCTATTGTTTCATC
AAAAACAGTAGTTTTCTGTTGCTGTAAAATTTCTAACCAGCTTGGATTGCATGTCTAACCCTTC
TTCCTCTGCTCTATCTCTTTTGTGATAATCAGTTGGCTTATTTCTGTATGCTCTAAATGTTCTA
ATTATCTGAAGAAAACATTTCTAACCCATCTTCTCCATGGAGATTGGCAGATGAAAAAGAAAAA
CTACCTGATATTGTTTTTATTTGATGATAGGAAAAAGACAAGCGCAAAGCCTTCCAGGAAGTTT
GTGAGAATTTCAGGTTTAAACTTTGGAATATAAGATATCTTATGTTCAATTGTTATGGTTTTCA
AATCCTAACGTACTAGAGGCTTTTTGCAGACCTGTCATGCATTACTTTTTTCTAGAAAGATTTC
TTCAACCAGCTGATTGGTTTGAGAAAAGACTAGCTTACACGCGAAGTGTAGCAGCTACTTCAAT
GGTAGGCATATTCTGCTTTGCATTATTGTTTATGTCCTATTCATGTTAAAGTCAAGAATTGTTT
CCCCTTGTTATGCCATCCAACTATTCATTTTTTAACCTTCTAGGACATGATCCCGTTAATCCAA
ACATAAATAGATGGAAAGACAAAGAATGAACCAAAAAGCTTAGTTCCCATGTCTATTGCACTGA
TAGATATACTCTTTTGAGAACAATGAGTTGCCAAAAATTGTAGTTATTCTGTTTCCAACAATCA
AAGTTCTTCTGTTCTCTCCATATTGAAAAATTCCACTTTTATATAAATCGTTAGAACAAAGTGA
AAAATGGAATAAGTTCATCCATTTGGAGGATTTTTGGTCTGTATTATTTCCAAGAAAAACATGT
TTATGTTCTTTCCTTTGACTCGTTTATTTATGTTTTAAAAGGTACTATTTCTGATTTCTTGAGT
ATTAATAACTTCTATAAAAAAAAATATTAATAATGATTCAAATTAAATTCTGATTCATTACCTC
TTCGCAGGACAATGTAGTCTGTCACAAAATGTAATAATACTGAAAACATCTTTGTTTCAGGTGG
GTTATATTGTTGGCCTTGGAGATAGACATACTATGAATCTTTTGATTGATCAGGCCACAGCAGA
AGTTGTTCACATTGATCTTGGTGTTGCTTTTGAACAAGGTTTAATGCTCAAGACACCAGAGAGG
GTAGCTTCTTCCATAATTTAACATTCTTTTTTCTCCCATTACTTCTTTCAATTATTGTTAATTA
ATGAGAAATCTGACATATTTCTGTGAAATAGACTTTAAAACTTATACTGTCCAATCGCCACTGC
TGTAGGAAATTAAATTACACAAGCTTAGGAGGAAATCTTTCTTAGGAGTAACCAGAAAATTAAT
GGCCAGATTTTAGCAACTAAATAAGGGAAGAAACACGACTATTCTACAGCTGTAGAAGATCTGT
GTAATCTCTCCTTGATTTAAGTCAACCAAATCAATTCCTTAAAAAAAACAATCCGTAGGTGACA
TAGCCAGTTTGCATTTTAGATTCTTTGGATCTTTTGTCAATTATGGATGTTCAAAGGATTAGTA
GCAAGTTTAGGCACGTGTAGCACAGGTTTCGGGGAGAGGGGTATGAGGGGAGTAATTATGTTTC
CTGCAATTTGACACCATTTTACCATTGGTAACTCTCTTTTGGTTCCGGGAGATGTAGTATATGT
AGTGAAGTGATATGACCTATTGGTAATGTGGTCAGTAGCACCCGAATCAACAACTTAGATTTAT
TGTGTTGTACTTTCCCTTGAATTAAGAGAATGGGATAAGGAATGGTTACCTAAATGTGCAAATG
AACATGTATCAACCTTTTTTCTATTGAAGTAAGAAGATTTCAAAGCTTCTCATTCTTCTCTTTG
TTTAACTGATTGGTCTCAGTTTGGGTTGGATTTGAGGTTTCAGAGACAAGATATTATGGTTTTT
CTGGGTTGAGAGAAATGGTCTTTCTTGTTTAGATTTTTATCTATGTACAATATTGGAGAATCTA
GGATGGAATTCCTTTATTCGAGTCAGAAAATCCTCAAGGATTTGTCAGCTATTAGTATTTCTCA
CCGATTATTCCTTTAATTGTGCCAGGTTCCGTTCAGGCTAACAAGAGACATCATCGATGGCATG
GGTGTTGCTGGAGTGGAAGGTGTTTTCAGAAAATGTTGCGAGGAAACTCTCTCTGTAATGCGAA
CAAACAAAGAAGCTCTAATGACTATTATCGAGGTATGACTTTCGTGGACAACTTAAATTCCCTA
CATTAAGTATCCTTTCCTGATGATGAAAACTATTTGCAGGTTTTTATCCATGATCCTCTTTATA
AGTGGGCTTTATCACCCCTGAAGGCTTTGCAGCGTCAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.104295949
Functional Information
Coding potential Y
Potential coding position 44606600-44610026(+)
Potential amino acid sequence MEQFFGLVNTFLQNHRDTWKRRLVIRTYKVVPFTPSAGVIEWVDGTLPLGEYLIGSNRNGGAHG
RYGIGDWSFLKCRVHMSNEKDKRKAFQEVCENFRPVMHYFFLERFLQPADWFEKRLAYTRSVAA
TSMVGYIVGLGDRHTMNLLIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVAG
VEGVFRKCCEETLSVMRTNKEALMTIIEVFIHDPLYKWALSPLKALQRQKVMEQFFGLVNTFLQ
NHRDTWKRRLVIRTYKVVPFTPSAGVIEWVDGTLPLGEYLIGSNRNGGAHGRYGIGDWSFLKCR
VHMSNEKDKRKAFQEVCENFRPVMHYFFLERFLQPADWFEKRLAYTRSVAATSMVGYIVGLGDR
HTMNLLIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVAGVEGVFRKCCEETL
SVMRTNKEALMTIIEVFIHDPLYKWALSPLKALQRQKVMEQFFGLVNTFLQNHRDTWKRRLVIR
TYKVVPFTPSAGVIEWVDGTLPLGEYLIGSNRNGGAHGRYGIGDWSFLKCRVHMSNEKDKRKAF
QEVCENFRPVMHYFFLERFLQPADWFEKRLAYTRSVAATSMVGYIVGLGDRHTMNLLIDQATAE
VVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVAGVEGVFRKCCEETLSVMRTNKEALMTI
IEVFIHDPLYKWALSPLKALQRQKVMEQFFGLVNTFLQNHRDTWKRRLVIRTYKVVPFTPSAGV
IEWVDGTLPLGEYLIGSNRNGGAHGRYGIGDWSFLKCRVHMSNEKDKRKAFQEVCENFRPVMHY
FFLERFLQPADWFEKRLAYTRSVAATSMVGYIVGLGDRHTMNLLIDQATAEVVHIDLGVAFEQG
LMLKTPERVPFRLTRDIIDGMGVAGVEGVFRKCCEETLSVMRTNKEALMTIIEVFIHDPLYKWA
LSPLKALQRQK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b