Detail information of BGIOSGA029072_circ_g.1


General Information
CircRNA Name BGIOSGA029072_circ_g.1
ID in PlantcircBase osi_circ_018109
Alias Chr08:28092531_28093141(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 28630718-28631328  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA029072
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA029072-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCACAGGGTATTTTTGTCAACTTCAAGGACTTGTACTATTACAACGGGCAAAAGCTTCCTTTC
GCAGCAGCTCAAATCGGGCAAGCATTCCGTAATGAGgcacttcgttttggaggagaacatgttg
gaggttgactgcccctgtgtgacgcctgaggttgtgttgaaggcatcggggcatgtcgagaagt
ttactgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCACTTCGTTTTGGAGGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTTGTG
TTGAAGGCATCGGGGCATGTCGAGAAGTTTACTGACCTCATGGTTAAGGATGAGAAGACAGGCA
CATGCTACCGTGCTGACCACCTGTTGAAAGATCACTGCAAGGAGAAGCTTGAGAAGGATCTCAC
CTTGTCCCCGGAGAAGGCAGCTGAATTGAAGCATGTTCTTGCTGTCCTGGATGACCTTTCAGCA
GATGAACTTGGCGCAAAGATTAAGGAATATGGGATTGTTGCCCCTGATACTAAGAACCCGCTCT
CTGATCCCTACCCGTTCAATCTTATGTTCCAGACATCCATCGGCCCTACCGGTCTTAATGTTGG
GTAAGAATATCAATGTTCACTTTTTTTAACCCAAGAGATTAATGATCACTGTTTAATTCTGTTG
TTATGCTGATTGGCAGAATGTGTTCAATTTTGTGTGAACAAACAGGTATATGAGACCAGAAACA
GCACAGGGTATTTTTGTCAACTTCAAGGACTTGTACTATTACAACGGGCAAAAGCTTCCTTTCG
CAGCAGCTCAAATCGGGCAAGCATTCCGTAATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021