Plant Circular RNA Database

Detail information of Os11g0546000_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os11g0546000_circ_g.2
					
						ID in PlantcircBase
						osa_circ_009562
					
						Alias
						Os_ciR7086
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 20129732-20133331  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os11g0546000						
					
						Parent gene annotation
						
							Similar to RNase L inhibitor-like protein. (Os11t0546000-01);Sim
ilar to RNase L inhibitor-like protein. (Os11t0546000-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0546000_circ_g.1 Os11g0546000_circ_g.3 Os11g0546000_circ_g.4 Os11g0546000_circ_g.5 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0546000-01:9
Os11t0546000-02:9

General Information
CircRNA Name	Os11g0546000_circ_g.2
ID in PlantcircBase	osa_circ_009562
Alias	Os_ciR7086
Organism	Oryza sativa
Position	chr11: 20129732-20133331 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os11g0546000
Parent gene annotation	Similar to RNase L inhibitor-like protein. (Os11t0546000-01);Sim ilar to RNase L inhibitor-like protein. (Os11t0546000-02)
Parent gene strand	+
Alternative splicing	Os11g0546000_circ_g.1 Os11g0546000_circ_g.3 Os11g0546000_circ_g.4 Os11g0546000_circ_g.5
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0546000-01:9 Os11t0546000-02:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTAGCTGACAAGGTCATTGTTTATGAGGGGCGGCCTTCTATCGACTGTACTGCCAATGCACCA
CAGTCTTTGGTATCTGGGATGAATAAGTTCTTATCGggaagctttgcatcgaagtaactccggc
gtcgaagcttgcgttcatttctgaagagctgtgtattggttgtggtatttgcgttaaggtatgt
ttgctgct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1592
Transcript exons: 20129732-20129817,20129912-20130009,20130130-20130247,20
130380-20130469,20130950-20131254,20131342-20131537,2013
1615-20131797,20131893-20132162,20133086-20133331
GGAAGCTTTGCATCGAAGTAACTCCGGCGTCGAAGCTTGCGTTCATTTCTGAAGAGCTGTGTAT
TGGTTGTGGTATTTGCGTTAAGAAATGCCCGTTTGATGCCATTGAGATTATCAACCTTCCTAAG
GATTTGGAAAAAGATACTACTCATCGCTATGGTCCAAACACCTTCAAATTGCACAGGTTGCCCG
TTCCAAGACCTGGTCAAGTTTTAGGCCTTGTTGGGACAAATGGAATTGGAAAGTCGACAGCACT
CAAAGTGTTAGCTGGCAAGCTCAAGCCTAATTTGGGACGATTTAAAAATCCACCAGACTGGCAG
GAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAACTATTTTACACGCATATTGGAGGATA
ACCTTAAGGCAATCATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGT
TGGGCAAGTACTTGACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAA
TTGAACCAAGTTATTGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGA
TAGCAGTTGTTGCTGTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGA
TGTTAAGCAGAGGCTTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGCTATGTG
ATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTTTATTTGCTGCTTGTATG
GGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGAGAAGGTATCAATATTTT
CTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAATCTCTTACTTTTAAGATT
GCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGACATACCAGCGATATAAGTACCCTACTATGA
GTAAAACACAGGGCAATTTCAAGCTCACTGTTGTTGAGGGTGAGTTCACTGATTCACAGATTGT
TGTGATGCTTGGTGAGAATGGGACAGGGAAAACTACATTCATCAGAATGCTGGCTGGGTTGTTG
AAGCCAGACACTGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTC
AGAAGATTAGCCCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTC
ATATACTCATCCTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGAC
CAGGAAGTTATCAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAA
AGCCTGCAGATATCTATCTGATTGATGAACCAAGTGCCTATCTTGATTCGGAGCAGCGCATTGT
TGCTTCGAAGGTTATCAAAAGATTCATCCTTCATGCAAAGAAAACTGCATTTATTGTGGAGCAT
GATTTCATCATGGCTACCTACTTAGCTGACAAGGTCATTGTTTATGAGGGGCGGCCTTCTATCG
ACTGTACTGCCAATGCACCACAGTCTTTGGTATCTGGGATGAATAAGTTCTTATCG
						
					

						Genomic sequence
						
							GGAAGCTTTGCATCGAAGTAACTCCGGCGTCGAAGCTTGCGTTCATTTCTGAAGAGCTGTGTAT
TGGTTGTGGTATTTGCGTTAAGGTATGTTTGCTGCTATTATACATACGCATGGAACTAGGATAT
GTCTTTGTTCTGTAATGTATGTTTCTCACTTCCGCTATGATCTTTGTTGCAGAAATGCCCGTTT
GATGCCATTGAGATTATCAACCTTCCTAAGGATTTGGAAAAAGATACTACTCATCGCTATGGTC
CAAACACCTTCAAATTGCACAGGTATTGATGTTTGATTTGAGGAGCTGTGTTGATATGAACTTT
TGCATTTTTTTAATCCAAGTATTACTGTAATTTAGGTGAAACCATATCTTTGGATAGTTACTGA
TTTAGCACTTGCAGGTTGCCCGTTCCAAGACCTGGTCAAGTTTTAGGCCTTGTTGGGACAAATG
GAATTGGAAAGTCGACAGCACTCAAAGTGTTAGCTGGCAAGCTCAAGCCTAATTTGGGACGATT
TAAAGTATATATTTTTACCTCGTGCCCAATTTCTCTGTTGCTGACTGTTAAATTATGTGTTCTC
ATAGAAAGTTGACTTCCTTCCTTTCCTTTTATACTGATACAAGTAATGGGAATCCACCTATATT
TGTTGCAGAATCCACCAGACTGGCAGGAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAA
CTATTTTACACGCATATTGGAGGATAACCTTAAGGTATTGCATTGCCACTTCTTTTTATCCATT
GTGTTTGTCCTTCTTTTAGGCTTTTTTAGCATGTACTCTGCGACAGTAATAAATATCTTAATTT
GTCGTTTACCATCACTATGTGTGGGCTCTGAGTACAATAGCATCAGTGAGGTATTTGTTTCAGT
CTTATTTTTGGTTCTATAGCATCATACATTTTTCTGGTAAACTTTTGTATGCATGCAAACAGTA
ACAACACATAGCGTCAGCAAGATACTATTGATCTTCCACTTATGCAACCTGCATTAAATTATGC
ACTCAAATATTGTCCGAATCTCAGGTATTAAATATTGCTTTGATTTATTACATGTCAAAAAACC
CTTAGTAGCCAAAAAACAGATATTCTGGCATTGGAATAGACTGTCGCTATGTTTGATATTATCA
GTATTGATTGCTTCATACTTCTATTAACTTACATGCATGCTGACATGCTCTATTTCTCTTTCCT
AGGCAATCATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGTTGGGCA
AGTACTTGACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAATTGAAC
CAAGTTATTGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGATAGCAG
TTGTTGCTGTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGATGTTAA
GCAGAGGCTTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGGTAACATATTCGT
TATGTTATTACTATGATTATGTAAATTTAAACTTTGACGAATGCAATATCAAGTTCTATCCTAT
GTATTTTCAGCTATGTGATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTT
TATTTGCTGCTTGTATGGGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGA
GAAGGTATCAATATTTTCTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAAT
CTCTTACTTTTAAGGTAACCTGTGCCTTTTCAGATTTAGATTTTTGGCTATGTGATGAAACATT
GTTTTTATGTATGTTCTGTCCTTTCAGATTGCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGA
CATACCAGCGATATAAGTACCCTACTATGAGTAAAACACAGGGCAATTTCAAGCTCACTGTTGT
TGAGGGTGAGTTCACTGATTCACAGATTGTTGTGATGCTTGGTGAGAATGGGACAGGGAAAACT
ACATTCATCAGAATGCTGGTACGCCACCCTTCCTCCGTAACTACCCTAATCTTCAGTTCAAAAT
CAATCAACTAAATCTGCAGTTATCTTTCTGATTTGTTATGAATGGATAGGCTGGGTTGTTGAAG
CCAGACACTGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTCAGA
AGATTAGCCCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTCATA
TACTCATCCTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGACCAG
GAAGTTATCAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAGG
TAAATAGATGTTTCTTCTGACAAATATAATACACCATTTTTGTGCCTTTTAAAAGTTTTAAGAC
TTCATGACCTGTCTAGTTATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATTTCACATACTATATGCTCATTTGGCTTTTGTGACCAAA
TCTTCTAGGTCTGCATTTATGTTCCTGCAATGTTTTTTAAATTATATTTGCATCAAGAACAACA
ATACATAGACCGTAATTCGTATGATATTTCTTCCTGTTTTATGTGGGATTTCAGAATGCATTAA
ACTACGGATACATGCACATGGTCTTTCTAAACCTGTCACTGATGGATTTCAATGAGTTCTATTC
CTTGCTCTTCTCAGAAATGCCATTTTGGAATCTGTTTTAGTTGGCTTAGAACACATTTTATCCA
TTTATATCCTTTGATGTGGACCTGGTGTGGCTCAATCTGTTTTGCTAGATGACATTGGAGTTAG
ATATTTGTATTGTTGTATGTTTTACTTAAGCATAGAATGACTCAAGAAATAATTATTTTTCCTG
TGGGCCTACTGTCATGGGGTAGATCATAAGAGGAGGGAGATAAATCAATCTGAAATTTGTAACA
CTGATTAGACAATGGTCTTGAATTTGGAGACTTGTAGTGCTACAGATCTCAGTCGCGGTGTGCT
TTTCTCATAAAATAACAATCAAAGAATATGTCTTGTATTATTTACTTTTGTTTGCACTTTTGAA
GCCTCTGAATAATGGCTATGAACAATCCAATTGATGATCCACCTAACATATCCGTAGTACTTTC
ATGTGGCTAAGCACCTAAATGCTGTATTGCCTATATAAATATTGACTTGATTGTCAGCTTATTG
ATACTTGCAATGTGGTATATGTTCAGCCTGCAGATATCTATCTGATTGATGAACCAAGTGCCTA
TCTTGATTCGGAGCAGCGCATTGTTGCTTCGAAGGTTATCAAAAGATTCATCCTTCATGCAAAG
AAAACTGCATTTATTGTGGAGCATGATTTCATCATGGCTACCTACTTAGCTGACAAGGTCATTG
TTTATGAGGGGCGGCCTTCTATCGACTGTACTGCCAATGCACCACAGTCTTTGGTATCTGGGAT
GAATAAGTTCTTATCG
						
					

			
		

Sequences
Splice junction sequence	CTTAGCTGACAAGGTCATTGTTTATGAGGGGCGGCCTTCTATCGACTGTACTGCCAATGCACCA CAGTCTTTGGTATCTGGGATGAATAAGTTCTTATCGggaagctttgcatcgaagtaactccggc gtcgaagcttgcgttcatttctgaagagctgtgtattggttgtggtatttgcgttaaggtatgt ttgctgct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1592 Transcript exons: 20129732-20129817,20129912-20130009,20130130-20130247,20 130380-20130469,20130950-20131254,20131342-20131537,2013 1615-20131797,20131893-20132162,20133086-20133331 GGAAGCTTTGCATCGAAGTAACTCCGGCGTCGAAGCTTGCGTTCATTTCTGAAGAGCTGTGTAT TGGTTGTGGTATTTGCGTTAAGAAATGCCCGTTTGATGCCATTGAGATTATCAACCTTCCTAAG GATTTGGAAAAAGATACTACTCATCGCTATGGTCCAAACACCTTCAAATTGCACAGGTTGCCCG TTCCAAGACCTGGTCAAGTTTTAGGCCTTGTTGGGACAAATGGAATTGGAAAGTCGACAGCACT CAAAGTGTTAGCTGGCAAGCTCAAGCCTAATTTGGGACGATTTAAAAATCCACCAGACTGGCAG GAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAACTATTTTACACGCATATTGGAGGATA ACCTTAAGGCAATCATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGT TGGGCAAGTACTTGACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAA TTGAACCAAGTTATTGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGA TAGCAGTTGTTGCTGTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGA TGTTAAGCAGAGGCTTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGCTATGTG ATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTTTATTTGCTGCTTGTATG GGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGAGAAGGTATCAATATTTT CTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAATCTCTTACTTTTAAGATT GCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGACATACCAGCGATATAAGTACCCTACTATGA GTAAAACACAGGGCAATTTCAAGCTCACTGTTGTTGAGGGTGAGTTCACTGATTCACAGATTGT TGTGATGCTTGGTGAGAATGGGACAGGGAAAACTACATTCATCAGAATGCTGGCTGGGTTGTTG AAGCCAGACACTGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTC AGAAGATTAGCCCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTC ATATACTCATCCTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGAC CAGGAAGTTATCAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAA AGCCTGCAGATATCTATCTGATTGATGAACCAAGTGCCTATCTTGATTCGGAGCAGCGCATTGT TGCTTCGAAGGTTATCAAAAGATTCATCCTTCATGCAAAGAAAACTGCATTTATTGTGGAGCAT GATTTCATCATGGCTACCTACTTAGCTGACAAGGTCATTGTTTATGAGGGGCGGCCTTCTATCG ACTGTACTGCCAATGCACCACAGTCTTTGGTATCTGGGATGAATAAGTTCTTATCG
Genomic sequence	GGAAGCTTTGCATCGAAGTAACTCCGGCGTCGAAGCTTGCGTTCATTTCTGAAGAGCTGTGTAT TGGTTGTGGTATTTGCGTTAAGGTATGTTTGCTGCTATTATACATACGCATGGAACTAGGATAT GTCTTTGTTCTGTAATGTATGTTTCTCACTTCCGCTATGATCTTTGTTGCAGAAATGCCCGTTT GATGCCATTGAGATTATCAACCTTCCTAAGGATTTGGAAAAAGATACTACTCATCGCTATGGTC CAAACACCTTCAAATTGCACAGGTATTGATGTTTGATTTGAGGAGCTGTGTTGATATGAACTTT TGCATTTTTTTAATCCAAGTATTACTGTAATTTAGGTGAAACCATATCTTTGGATAGTTACTGA TTTAGCACTTGCAGGTTGCCCGTTCCAAGACCTGGTCAAGTTTTAGGCCTTGTTGGGACAAATG GAATTGGAAAGTCGACAGCACTCAAAGTGTTAGCTGGCAAGCTCAAGCCTAATTTGGGACGATT TAAAGTATATATTTTTACCTCGTGCCCAATTTCTCTGTTGCTGACTGTTAAATTATGTGTTCTC ATAGAAAGTTGACTTCCTTCCTTTCCTTTTATACTGATACAAGTAATGGGAATCCACCTATATT TGTTGCAGAATCCACCAGACTGGCAGGAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAA CTATTTTACACGCATATTGGAGGATAACCTTAAGGTATTGCATTGCCACTTCTTTTTATCCATT GTGTTTGTCCTTCTTTTAGGCTTTTTTAGCATGTACTCTGCGACAGTAATAAATATCTTAATTT GTCGTTTACCATCACTATGTGTGGGCTCTGAGTACAATAGCATCAGTGAGGTATTTGTTTCAGT CTTATTTTTGGTTCTATAGCATCATACATTTTTCTGGTAAACTTTTGTATGCATGCAAACAGTA ACAACACATAGCGTCAGCAAGATACTATTGATCTTCCACTTATGCAACCTGCATTAAATTATGC ACTCAAATATTGTCCGAATCTCAGGTATTAAATATTGCTTTGATTTATTACATGTCAAAAAACC CTTAGTAGCCAAAAAACAGATATTCTGGCATTGGAATAGACTGTCGCTATGTTTGATATTATCA GTATTGATTGCTTCATACTTCTATTAACTTACATGCATGCTGACATGCTCTATTTCTCTTTCCT AGGCAATCATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGTTGGGCA AGTACTTGACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAATTGAAC CAAGTTATTGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGATAGCAG TTGTTGCTGTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGATGTTAA GCAGAGGCTTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGGTAACATATTCGT TATGTTATTACTATGATTATGTAAATTTAAACTTTGACGAATGCAATATCAAGTTCTATCCTAT GTATTTTCAGCTATGTGATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTT TATTTGCTGCTTGTATGGGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGA GAAGGTATCAATATTTTCTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAAT CTCTTACTTTTAAGGTAACCTGTGCCTTTTCAGATTTAGATTTTTGGCTATGTGATGAAACATT GTTTTTATGTATGTTCTGTCCTTTCAGATTGCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGA CATACCAGCGATATAAGTACCCTACTATGAGTAAAACACAGGGCAATTTCAAGCTCACTGTTGT TGAGGGTGAGTTCACTGATTCACAGATTGTTGTGATGCTTGGTGAGAATGGGACAGGGAAAACT ACATTCATCAGAATGCTGGTACGCCACCCTTCCTCCGTAACTACCCTAATCTTCAGTTCAAAAT CAATCAACTAAATCTGCAGTTATCTTTCTGATTTGTTATGAATGGATAGGCTGGGTTGTTGAAG CCAGACACTGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTCAGA AGATTAGCCCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTCATA TACTCATCCTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGACCAG GAAGTTATCAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAGG TAAATAGATGTTTCTTCTGACAAATATAATACACCATTTTTGTGCCTTTTAAAAGTTTTAAGAC TTCATGACCTGTCTAGTTATATATATATATATATATATATATATATATATATATATATATATAT ATATATATATATATATATATATATATTTCACATACTATATGCTCATTTGGCTTTTGTGACCAAA TCTTCTAGGTCTGCATTTATGTTCCTGCAATGTTTTTTAAATTATATTTGCATCAAGAACAACA ATACATAGACCGTAATTCGTATGATATTTCTTCCTGTTTTATGTGGGATTTCAGAATGCATTAA ACTACGGATACATGCACATGGTCTTTCTAAACCTGTCACTGATGGATTTCAATGAGTTCTATTC CTTGCTCTTCTCAGAAATGCCATTTTGGAATCTGTTTTAGTTGGCTTAGAACACATTTTATCCA TTTATATCCTTTGATGTGGACCTGGTGTGGCTCAATCTGTTTTGCTAGATGACATTGGAGTTAG ATATTTGTATTGTTGTATGTTTTACTTAAGCATAGAATGACTCAAGAAATAATTATTTTTCCTG TGGGCCTACTGTCATGGGGTAGATCATAAGAGGAGGGAGATAAATCAATCTGAAATTTGTAACA CTGATTAGACAATGGTCTTGAATTTGGAGACTTGTAGTGCTACAGATCTCAGTCGCGGTGTGCT TTTCTCATAAAATAACAATCAAAGAATATGTCTTGTATTATTTACTTTTGTTTGCACTTTTGAA GCCTCTGAATAATGGCTATGAACAATCCAATTGATGATCCACCTAACATATCCGTAGTACTTTC ATGTGGCTAAGCACCTAAATGCTGTATTGCCTATATAAATATTGACTTGATTGTCAGCTTATTG ATACTTGCAATGTGGTATATGTTCAGCCTGCAGATATCTATCTGATTGATGAACCAAGTGCCTA TCTTGATTCGGAGCAGCGCATTGTTGCTTCGAAGGTTATCAAAAGATTCATCCTTCATGCAAAG AAAACTGCATTTATTGTGGAGCATGATTTCATCATGGCTACCTACTTAGCTGACAAGGTCATTG TTTATGAGGGGCGGCCTTCTATCGACTGTACTGCCAATGCACCACAGTCTTTGGTATCTGGGAT GAATAAGTTCTTATCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.284245049

Conservation Information
Conserved circRNAs	NA
PMCS	0.284245049

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20131170-20129749(+)
20129979-20133255(-)
20129933-20133272(-)
						
						Potential amino acid sequence
						
							MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP
FSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVV
EGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVR
HLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKPADIYLIDEPS
AYLDSEQRIVASKVIKRFILHAKKTAFIVEHDFIMATYLADKVIVYEGRPSIDCTANAPQSLVS
GMNKFLSGSFASK*(+)
MSSIFFQILRKVDNLNGIKRAFLNANTTTNTQLFRNERKLRRRSYFDAKLPDKNLFIPDTKDCG
ALAVQSIEGRPS*(-)
MASNGHFLTQIPQPIHSSSEMNASFDAGVTSMQSFPIRTYSSQIPKTVVHWQYSR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20131170-20129749(+) 20129979-20133255(-) 20129933-20133272(-)
Potential amino acid sequence	MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP FSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVV EGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVR HLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKPADIYLIDEPS AYLDSEQRIVASKVIKRFILHAKKTAFIVEHDFIMATYLADKVIVYEGRPSIDCTANAPQSLVS GMNKFLSGSFASK(+) MSSIFFQILRKVDNLNGIKRAFLNANTTTNTQLFRNERKLRRRSYFDAKLPDKNLFIPDTKDCG ALAVQSIEGRPS(-) MASNGHFLTQIPQPIHSSSEMNASFDAGVTSMQSFPIRTYSSQIPKTVVHWQYSR*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os11g0546000_circ_g.2

Address

Any questions?

Supported by