Detail information of Solyc10g006500.2_circ_igg.1


General Information
CircRNA Name Solyc10g006500.2_circ_igg.1
ID in PlantcircBase sly_circ_003037
Alias NA
Organism Solanum lycopersicum
Position chr10: 1081541-1086146  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method Segemehl, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATAGATAAAAGCAAATGTAAGTACATTCAAATGAATTGTTGGCTTGCACCTTTTTCCTGTTA
CATTTGACACCAAATCCTCCAATAATCCTGTGGATTctcatggtcttctattcgcttctgcttt
ttacgtttcttctcaggtttgtcttcgtgttaacggccgaagacaccatagatggagaacgaaa
atgttcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATGGTCTTCTATTCGCTTCTGCTTTTTACGTTTCTTCTCAGGTTTGTCTTCGTGTTAACGG
CCGAAGACACCATAGATGGAGAACGAAAATGTTCCACGCTAGGTACGTTTCTCTCTCCCTCTCT
CCCTCTGAAACAGAAGTGGAATTCGCCATTACCAAGAGGCATGTATAAGAAATTGTATTAGGAA
AAAAAAAAGATTGTGGTAATATGTGATCTTTATAATATAGTACTTGATTTATTGCAGATATTAG
AAACATTAATAATAGAATGTTATGTAAATATTTCAGCATGATATTATAGCAGTCTGTAGATACA
TCAGGAAACTAAAGAATCTTCACAATACAAAAAAAAGGTTTTGAGGTTTAATATCCAAGAACAC
TATTGTTCAAGTTGTTGAAGGGGAGCGTTGTGAAAACGGTAAAGTTGTTTATTTTTGGCCTATA
GGTCACGGGTTCGAGCTGTGGAATCAGCCACTGATGCAATCATCAGGTAGGCTGCCTACATCAC
ACCTTAAGGTGCGGCTCTTCCCTGAACCCTGCATGAACACGGGGTACTCAGTGCACCTGTCTGC
CCTTATTCTTACTGCTCAAGTAGTTGTAACTTAAACTAACTAAATTATGCTGATCATCTTTGTG
TTCGTACGTTTACCAGAGAACTCTTGCAACATGTAGATGAATCAAAACATCTACAGATTCATTG
ATTGAACATACTAAGACAGCAAGCTTATAGAAGTGAATAACACTTGTTCTATTTCGGCATAATA
CATAGATAGACACTATAACTTGGCCTCCACTGGCAACTGAACACACCAACTTTCATTGTGACTG
TATACATACTACAGCTTGACACAAGTGCATCTCATGAAGAACTTAACTTCGCAAACATATCTAG
ACTTTGGGGGGGAAGGGAGGGGGTGCATTCTAGATGTGAGTTCTCAAAGTTGGGGTGTTTACGA
GGCCAACTTAAACCAAGTTAAGGCGTTTAGATTTTCATTTTCAAAGTCGAGGTGTATAGTTGTC
AGTTGAGACCAAGTTAAGGTGTCTATCTATGTATTATGTCTTCAATATATTCAGAAAAAAGAGT
ATCAATATAACACTTATACCACCATTTCTTTTCCAGTTTTCTTTTCTTTCTTTTTTTCACTTGA
TGTGAGAGCCATTTTCACTGCTTGCCATTGAAGAAACTCTAAATTTCATTCTAAGGCAGGGTGC
TTGGGGAGAAAAATTGGACCAAGGATTTTGGGGTCACAGCTCGAATCAACAGTATGATTTTACG
CCTTCTATTTTCATCCTTTTGCGCATATTATTTTTGAAATCCCCTTTGAGCCGTGCTCATCTAA
GAGGAATAAGTTTTATGGGCAAACAGTATATGAAAGACGGGAGATCTTTGTAGAGCCATTTTCT
TCTACTTAAAATCACTAGCTCAAAATATCTATTCTCCCGTATTCTGTTAGGTACCTGAAGTGAT
ATATCAAGTATTGGAGGAACCTACAGACCAGATTGAAATCGAAGAAGGGCCGGAAACTCCTCAA
TCGTTGGAAGAGTTTATGGAAGAAATGAAGGACACAAGGCCAGATGCAGAAACTTTTGCTGTCA
AGCTTAAAACTATGGTATTTACGTACTTATCACGCGTTCTCCATCATGTATAGCGATAAAGTTA
ACTTAAGGTACCATATTTTGTCGTAGACAACAAGTTAAATGTGGACAAAGAACTTTCCCTGGTT
AATTTCTTGACTACTGTCAGGAGTTCACTGGTTCAAGTTGTGGAAATATAACATAAGACTCTTA
TAGTCTATGTTGCTCGGACTCTTCAAAATTGCCAATGGATGTGTGTGTCGGATCCTTGAAAAGT
AGTGCATATTTGGGGAATCCGACATGGGTGATACAACATTTTTAGGAAGTCCGAGTAACATTGC
TTATAGTAGACACAATGTCTTCCTGACCTTCCTAGACCCAGTGCATAGCGGGAGCTCAGTATAC
CAGGCTGCCCTTTTTTTGTTAAAACTTTCCTGGCGGCTTTACAATTAACTAGAAGGCAGACCAG
TTGATTATGAAGCAAAAGTCGTGAGATATTTACAATGTACTCATATTAACCACTTAAGGCTTGA
ATAGTGTTGAATTGTATGACCATCTCATCGGAAGGCTTAAACTTTTAGAGAGAGCACGTTCTTA
TTTACCAAATTACGTTTTCAACAATGAATGTCTATTTCTTGCAGGTAACACTCCTTGAACAAAG
AACAAGAACTGCCAAGATTCAAGAATACCTTTATCGGCATGTAGCATCTAGTGGCATCCCGAAA
CAGCTGCACTGCCTTGATCTCAAGCTAGCACATGAGCACTCCATCAACGCCAATGCCCGTCTCC
AGTTACCATCACCGGAACTTGTTCCCGCCCTTGTTGATAATTCATACTTCCATTTTGTCCTAGC
CTCTGACAATATTCTTGCTGCTTCTGTTGTTGCATCATCGCTTGTCCAGAACTCTTTCCGCCCT
GAGAAAGTTGTCCTTCACATTATCACGGATAGCAAAACCTTCTCACCGATGCAAGCTTGGTTTT
CGTTACATTCTTTGACACCTGCAATCATCGAGGTTAAAGCGTTGCACCATTTCGATTGGTTAAC
AAAGGGAAAGGTCCCAGTTCTGGAAGCAATGGAGAAAGACCAAAAAGCAAGATCACAATTCAGG
GGAGGGTCATCAGCAATTGTAGCGAACACAACCGAAAAGCCTCATATCATTGCAGCAAAACTGC
AAGCACTCAGTCCCAAATACAATTCTCTGATGAACCACATAAGGATATACTTGCCAGAGGTAAC
GGAAGTTTTAGAATCTCACTTAAGTTGCATGTAACGTTCATCTGTCCTTCTACGAAAAACTTTA
AATTTTAATGCTGAGAAGTAGAAATGTCTTTGCAGTTGTTTCCCAGTCTTGATAAGGTAGTCTT
CCTGGACGATGACATTGTCATTCAAACCGATCTTTCATCTCTATGGGACATTGACATGAACGGG
AAGGTGAATGGAGCGGTAGAGACATGCAGGGGAGAGGACAAGTTTGTGATGGCGAAGCGCTTTA
AAAGCTATCTGAATTTTTCTCATCCTCTCATATCGAACAACTTTGATCCTAATGAATGTGCATG
GGCCTATGGCATGAACATTTTTGATCTAGAAGCATGGAGAGAAACAAATATAAGTGAGGCATAC
CACTACTGGCTCGAACAGGTTAACTACAACTCTAAAAGTGACATCAACTGTTAATTTAATGAAA
TGCATTTTGAACATAATATGCAACATTCAAGCATTTTGTTTTAACTAGTACTCCCTCTGTCCCA
ATTTACGTGATGAACTTTGACTGGTCACGGAGTTCAAGAAACATAGAAAGACTGTTGAAATTTA
TGATTTAAAACAAGTCAGAGATATTTGCGTAACTACAGATCATCTCGTTTAAGGTTAAAATGGG
ATGCTTAATGTTAATCATCTCTAAATATAGAAAGGGGAAGTTAATCTTTTGCAAATGCTCGAAC
GTACTTGCTGAAAAAATCGATGATGATATATCTTCCTTTTCTTGTGCAGAACTTGAAGTCAGAT
CTAAGTTTGTGGCAGCTAGGAACATTACCTCCGGGACTAATTGCATTTCATGGTCATGTCCATG
CTATCGATCCCTTTTGGCACATGCTAGGACTCGGGTACCAAGATAACACGAGCATCCCAGATGC
TAAGAGTGCAGGTGTGATCCACTTCAACGGTCGAGCAAAACCTTGGTTAGATATAGCGTTCCCT
CAACTTCGATCCCTGTGGACAAAGTACGTTAACTTCTCCGATAAATTTATCAGAACCTGTCATA
TTAGAGCAACTTGAAATAAGGCAAGGGATTTGTTAACCATGTTGCTTGTAATCAAGAAACGAAA
TTTTGAGAGAGGTGGGTGATCCATGCATAGAAGGTCTCCTCCACTCCCTAACGCGAGATTGGCA
ACAGCTCCCCGGCCTGACATTCTTGAACACCTCAAAGCTACTACAATCTCTGGTTCCCGGAATG
TATTTTTATACTGTAGTTAGATATTATACAATGTACATGGTTCACCAAAATAATACTTGCAAAG
ATAATAAAAAAGGATACTCTTCCAAATTCAATTTAGGTGGCGTAGTTTGTGTATCTAGAAGCAT
GCCATTAAGGATAAAAAGATTGACGTAAAATTGTTCAAAAAAAAAGTAGTAAGATGTCATTCTT
TTAAATGACAGACTAATTAAGAAATAAAGCCACATAAATGGAATGGAGGGAGTCTCAATCTTCC
ATTTCAGTATAATCATTCAGAGTATGTAAGGAACAGAAGGTCCTAAAAGAGAATGAAATTACCA
AACAGACGTAAGGAAAGAACGAGGGCAGTAAATGAACTTCATCCGCCCTACCATGAATGACCAT
GAAGTGCGCTTAATCCACATATAACACGTACCAAATCCCTGGGAGCTACACAAACAAAAAACTT
CTCAGAGAGTTCTCATTAATTACATGATATAGATAAAAGCAAATGTAAGTACATTCAAATGAAT
TGTTGGCTTGCACCTTTTTCCTGTTACATTTGACACCAAATCCTCCAATAATCCTGTGGATT
Conservation Information
Conserved circRNAs NA
PMCS 0.183615617
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017