Detail information of Os05g0354400_circ_g.2


General Information
CircRNA Name Os05g0354400_circ_g.2
ID in PlantcircBase osa_circ_027525
Alias Os05circ08369/Os_ciR936
Organism Oryza sativa
Position chr5: 16782938-16783669  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, SMALT, Segemehl, find_circ
Parent gene Os05g0354400
Parent gene annotation Similar to ESK1 (ESKIMO 1). (Os05t0354400-01);Similar to ESK1 (E
SKIMO 1). (Os05t0354400-02)
Parent gene strand -
Alternative splicing Os05g0354400_circ_g.1 Os05g0354400_circ_g.3 Os05g0354400_circ_g.4 Os05g0354400_circ_g.5 Os05g0354400_circ_g.6 Os05g0354400_circ_g.7
Support reads 3/17/8
Tissues leaf and panicle/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0354400-02:1
Os05t0354400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGATTATGCGGTCAACGATGCTATGCATGTTTGGATCATCTGAGTTTGACTCAACTAGAAA
AGGTGACCAATAGAACTCGATAGTAGCATTGTACTCtgcatatgcacaggtgagacactcatga
agaagactgtacttcttttcggatctacatgcttttctacccatctagaccatgtcttgaggac
cttccggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 190
Transcript exons: 16782938-16783012,16783555-16783669
TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTATTGCAATTGATGTTGGCTTGATTATGCGGTCAACGATGCTATGCATGTTTGGA
TCATCTGAGTTTGACTCAACTAGAAAAGGTGACCAATAGAACTCGATAGTAGCATTGTACTC

Transcript length: 192
Transcript exons: 16782938-16783081,16783622-16783669
TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTAGACCATGTCTTGAGGACCTTCCGGTATGCAGCTACACGTTCCATTTCATCGTA
TTTCACTGGTTTCTTTCTCAACTAGAAAAGGTGACCAATAGAACTCGATAGTAGCATTGTACTC

Transcript length: 222
Transcript exons: 16782938-16783026,16783537-16783669
TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTAGACCATGTCTTGAGCCCAATTCGCTGCATGTTTTGCAATTGATGTTGGCTTGA
TTATGCGGTCAACGATGCTATGCATGTTTGGATCATCTGAGTTTGACTCAACTAGAAAAGGTGA
CCAATAGAACTCGATAGTAGCATTGTACTC

Transcript length: 234
Transcript exons: 16782938-16783027,16783526-16783669
TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTAGACCATGTCTTGAGGGTCCACCCCTTCCCAATTCGCTGCATGTTTTGCAATTG
ATGTTGGCTTGATTATGCGGTCAACGATGCTATGCATGTTTGGATCATCTGAGTTTGACTCAAC
TAGAAAAGGTGACCAATAGAACTCGATAGTAGCATTGTACTC

Transcript length: 362
Transcript exons: 16782938-16783099,16783470-16783669
TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTAGACCATGTCTTGAGGACCTTCCGGTATGCAGCTACACGTTCCATTTCATCGTA
TTTCACTGGTTTCTTTGAAAAGGACCCACCATGTAAAATTTTCATCTCTGGTGTATTCATCCAC
CAAATATAAGTGTTGAAAATCAAGTAGTCCACCCCTTCCCAATTCGCTGCATGTTTTGCAATTG
ATGTTGGCTTGATTATGCGGTCAACGATGCTATGCATGTTTGGATCATCTGAGTTTGACTCAAC
TAGAAAAGGTGACCAATAGAACTCGATAGTAGCATTGTACTC

Genomic sequence TGCATATGCACAGGTGAGACACTCATGAAGAAGACTGTACTTCTTTTCGGATCTACATGCTTTT
CTACCCATCTAGACCATGTCTTGAGGACCTTCCGGTATGCAGCTACACGTTCCATTTCATCGTA
TTTCACTGGTTTCTTTGAAAAGGACCCACCATGTCTGCAATCAAGGTGCATTTACAAGCTTAGT
CTAGCAATATACTACCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGAC
CATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTATTTTGTTATGAGTTGTTTTATCACT
CATAGTACTTTAAGTGTGATTAATATCTTATACATTTGCATAAAATTTTTGAATAAGACGAATG
GTCAAACATGTGAGAAAAAGTCAACAGTGTCATCTATTAAAAAATGGAGGGAGTAGGACATAAT
AATATTCCAGGCAATCCCAAAGATTTTGTCCAGCATGTCTCAATGTCCACAAGGATAAAAAATT
AGGTTTTAGAAGTTACTCACAAAATTTTCATCTCTGGTGTATTCATCCACCAAATATAAGTGTT
GAAAATCAAGTAGTCCACCCCTTCCCAATTCGCTGCATGTTTTGCAATTGATGTTGGCTTGATT
ATGCGGTCAACGATGCTATGCATGTTTGGATCATCTGAGTTTGACTCAACTAGAAAAGGTGACC
AATAGAACTCGATAGTAGCATTGTACTC
Conservation Information
Conserved circRNAs osi_circ_006182*
PMCS 0.615542812
Functional Information
Coding potential Y
Potential coding position 16783602-16783629(-)
16783011-16783629(-)
Potential amino acid sequence MHSIVDRIIKPTSIAKHAANWEGVDYLIFNTYIWWMNTPEMKILHGGSFSKKPVKYDEMERVAA
YRKVLKTWSRWVEKHVDPKRSTVFFMSVSPVHMQSTMLLSSSIGHLF*(-)
MGRKACRSEKKYSLLHECLTCAYAEYNATIEFYWSPFLVESNSDDPNMHSIVDRIIKPTSIAKH
AANWEGVDYLIFNTYIWWMNTPEMKILHGGSFSKKPVKYDEMERVAAYRKVLKTWSRWVEKHVD
PKRSTVFFMSVSPVHMQSTMLLSSSIGHLF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA