Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0354400_circ_g.2 |
ID in PlantcircBase | osa_circ_027525 |
Alias | Os05circ08369/Os_ciR936 |
Organism | Oryza sativa |
Position | chr5: 16782938-16783669 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, SMALT, Segemehl, find_circ |
Parent gene | Os05g0354400 |
Parent gene annotation |
Similar to ESK1 (ESKIMO 1). (Os05t0354400-01);Similar to ESK1 (E SKIMO 1). (Os05t0354400-02) |
Parent gene strand | - |
Alternative splicing | Os05g0354400_circ_g.1 Os05g0354400_circ_g.3 Os05g0354400_circ_g.4 Os05g0354400_circ_g.5 Os05g0354400_circ_g.6 Os05g0354400_circ_g.7 |
Support reads | 3/17/8 |
Tissues | leaf and panicle/root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0354400-02:1 Os05t0354400-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006182* |
PMCS | 0.615542812 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16783602-16783629(-) 16783011-16783629(-) |
Potential amino acid sequence |
MHSIVDRIIKPTSIAKHAANWEGVDYLIFNTYIWWMNTPEMKILHGGSFSKKPVKYDEMERVAA YRKVLKTWSRWVEKHVDPKRSTVFFMSVSPVHMQSTMLLSSSIGHLF*(-) MGRKACRSEKKYSLLHECLTCAYAEYNATIEFYWSPFLVESNSDDPNMHSIVDRIIKPTSIAKH AANWEGVDYLIFNTYIWWMNTPEMKILHGGSFSKKPVKYDEMERVAAYRKVLKTWSRWVEKHVD PKRSTVFFMSVSPVHMQSTMLLSSSIGHLF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |