Detail information of BGIOSGA024678_circ_ig.2


General Information
CircRNA Name BGIOSGA024678_circ_ig.2
ID in PlantcircBase osi_circ_007081
Alias 7:4996507|4998696
Organism Oryza sativa ssp. indica
Position chr7: 4996507-4998696  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA024678_circ_ig.1 BGIOSGA024678_circ_ig.3 BGIOSGA024678_circ_ig.4 BGIOSGA024678_circ_ig.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTACTGATATTTTATTTTTCAGGGTACAAAATACATGAACATCCATGTAAAGATCATTTTC
AGTGGGTAACAAGCCCAAGTGCCCAACTAGTATATGtttattacatgtttcgtaggaagatggc
attaatcaactagccagctaataacagagaacatgttcttggtatggagtttatctttcaaatg
gtgaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTATTACATGTTTCGTAGGAAGATGGCATTAATCAACTAGCCAGCTAATAACAGAGAACATGT
TCTTGGTATGGAGTTTATCTTTCAAATGGTGAATGAGTTTTACTGGATGCCGAGTTGACAAACA
TTGAAAGACCATACTACCATTGTCTGCAGAGGTTGCCAGCGTGCAATTCAATGCTAAAGCAGTT
AAAAGAGGATCACAGTCATCCATCTCTTTAAGATATGGTATGGAGTTTTTCAGATGCTAATATA
TATTTATACTGCATTCTTCCTCTCATCTGGTGTGCTTAAACCATTCTATAATTTACATCGTAAT
AACATTTAAAGCCTCAAACAACTTAAATGCTGGTATTTTCTTTTGAATATAAGATGTTCATGGG
AAAAGTCTGAAGCGGGAAAACCAATCCTGAAGCTACTATGGAGGAAGTCACTGAGGAGAAAACT
ATATATTTAAGGTTTGGCATCCTATGCTTCTGTAGTGCTCAAGCTATCAATGCAATCTTAATTT
TGCTTTCAGATGTTAACTGAAATATTGAATGCTATTTTCCTTGGAGTTACTATAAAATTTACTG
ACTTGAGTTTATTTTCTTAGATATGATGAGATGTGCCCTTTGAAGTATCTGTGCTCCTATATTG
CCATAACGATTTTTAATTAGAACCTCAGTTGTAATATTTTAATCCATATAATGCCAATTGTGCA
CCTTTCTTCAAGATGAGATATTTTATTTTCTTATTGTGTTTGCTCTGGTCTGTAACTAAGACAT
TAAATGCTCATCCAATTATTGTATTTAAAAGGAGTCCTACAGAATATGTCTTCATTGATCTGAC
TGTATATTCTAAAGAGTAATTTGATAAAAACCATAAAAAACTTAGATAGTCAAGTTTACAATCG
TAAAATATTTTTTTTGTCTTGCGATTCTTAATATATGCTACTTTTTGTTGTATTAGATAATAGC
GAAAAAAATCTGCACAAATATCACTTGCTAATATAATTTTGAATGCCTCTGAAATTACACTGAG
ATATATATCTTCAGTCTTTTACAGAAAATAAAATGACATTGCTGAAACAAATGACCATTTTTTA
CGTTAATTGAATAACATGGCAAACCTCCAGAAGAATCTTCATATTAATCGCAGTTCCCCTGTTC
ACAGAAGATAGGAATTTGAGCTCATGAACAAAATCTTCAGAATCAGGACATGCGTAAAAAATAA
GATCATAATCATGAATAAATGAGCTGCATATATCATAGTGTTTTTCTTAATTTGGATAGCTAGC
AAAGATAAATACTATGGTAAACTGCATTAAAACTGGCATAAAGGATATAAGCAGATTAGAGTAG
CATTTTCTTTTCTTTTCTGCAGAAGAAGTTCATCGCATTGTAGAGTCTGCATAGGTTCACATCC
GAAACCCCACGGCTTATTCACATCCCGATCAGGTCTCCTATGACACAATTAACAACCTATCATT
GAAGAGCATGCCTTTCTTCCGTGAGAAGTGTGCTCTCATAGACTCTCTTTTCCCTTCCCTTTGC
AAATAGGCAGCGCCAACAGCCATATCTAGGAGGTGAGCCAATCCCTTTCTTCATCAATAGGAGG
TGGCTGTAGTGGCTTGCCGCTTGCAGCAAGTTACGATGCATATTCTTGTTTTTTTTCCTTATTT
TCTAACTGAATGAGGTTATCATTTTTTTTTCTTTTGGTACGTACTTATGCTTCGTATCTTGTTG
ATTGGGGCCTTGTTTGAACCTTATTCTTAGTTAAAAGATTGACTGGTGTAAATCACTTTATCTT
ATTCTTACATTCTAATGGTGTTCAGTTGATTGTTTCTTTTGAATGTCGGGCAAGCCACTACACT
GCCTGAGCCAGAGATAAAAGCATATGATGTGCTCCGGTACATTCATGCTGTAAAGGACACATTC
CCAGACCAGCCCTAGAAGCTTGATGAGTCATCATAATTTTGCTTCATTTCAAGAGCAAGAGGTG
GAATTACTCACGTATGTCGGTAAGACACTTGCATGCTAATGATTAATTATATTAGAGTGAGATA
TTTGTGCTATTAGGAGTGTGTATGGATCGCTAAGCTAAATACATGTTACTGATATTTTATTTTT
CAGGGTACAAAATACATGAACATCCATGTAAAGATCATTTTCAGTGGGTAACAAGCCCAAGTGC
CCAACTAGTATATG
Conservation Information
Conserved circRNAs osa_circ_033099* osa_circ_033100*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021