Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17710_circ_g.2 |
ID in PlantcircBase | ath_circ_003143 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6091309-6091704 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, circRNA_finder |
Parent gene | AT1G17710 |
Parent gene annotation |
Inorganic pyrophosphatase 2 |
Parent gene strand | - |
Alternative splicing | AT1G17710_circ_g.1 |
Support reads | 3 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G17710.1:2 AT1G17710.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.336898148 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6091699-6091311(-) |
Potential amino acid sequence |
MMKELHDHGKTIEEIKQVLRRIPIHPRVIPAIKSAHALGCELRIVSDANTLFIETIIEHLGIGE FFSEINTNPGLVDEQGRLIVSPYHDFTKSSHGCSRCPPNMCKNRMMKELHDHGKTIEEIKQVLR RIPIHPRVIPAIKSAHALGCELRIVSDANTLFIETIIEHLGIGEFFSEINTNPGLVDEQGRLIV SPYHDFTKSSHGCSRCPPNMCKNRMMKELHDHGKTIEEIKQVLRRIPIHPRVIPAIKSAHALGC ELRIVSDANTLFIETIIEHLGIGEFFSEINTNPGLVDEQGRLIVSPYHDFTKSSHGCSRCPPNM CKNRMMKELHDHGKTIEEIKQVLRRIPIHPRVIPAIKSAHALGCELRIVSDANTLFIETIIEHL GIGEFFSEINTNPGLVDEQGRLIVSPYHDFTKSSHGCSRCPPNMCK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |