Detail information of BGIOSGA033839_circ_g.2


General Information
CircRNA Name BGIOSGA033839_circ_g.2
ID in PlantcircBase osi_circ_003184
Alias 11:16914207|16917291
Organism Oryza sativa ssp. indica
Position chr11: 16914207-16917291  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033839
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033839_circ_igg.1 BGIOSGA033839_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033839-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTTGTCAACTACTTGGCTCTTTTCAAGCTCTTGTTGTTTGCGGATATTTTCGTCGGTCAAT
TTCAGTAAGCGATCATTTGTGACCCATTCATCCCAGttgttatccttctttgtccggtgctcca
agtacttctttagaatatcatcgaccgtgggggaccgaggtagcttcacaagctgcagtacaag
gaaattgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTTATCCTTCTTTGTCCGGTGCTCCAAGTACTTCTTTAGAATATCATCGACCGTGGGGGACC
GAGGTAGCTTCACAAGCTGCAGTACAAGGAAATTGGCTCAGGAAAGGAACTGGTAGAATGATAA
ACAGTTACAGTTAACTTTGGCATACATCACTGAGGACAAACTCATCGTATTCGTAGTTTTCTAA
CAAGTACCTTTTCACATCAGGGATTAGTGCAACATAATGACTTGAAACACTCAAGTCTATCTAG
TTGTTAGTAATTCTTACTTCTTGAAATAGTAACCTTTTTGGGGAAACTTAATTCTTATAAGTTT
CCTTAACATGAGAAATGAACATGACAACATATTGGCATCAGTCAATCATGTTCAAAAAGATGCA
GAAAGTCCAGCTCCACAGATACACGAAATATACAAAAGATACACAATATAACTAATGATCTAGG
TAAGTTTGAGTGGTATATATCAAGGTTGCTTATCTAACAGTAAGGTGGTATATGTCAAAATTTA
GCTGCGGAATGTACAATGAACAATATATCCACTGGTCAAGATTGCTAGTCTTTTTTTCTGAACG
AAATAAAGATTTCAAGTATTCATTCTCTTATTGGTTCCTATTTGATACAAACATGCTTCTCTTA
AGTACCTGTTGTTCCCATGCCAACTCAGACACAATATTCAATTATAATTGAACAATGAAGGTTG
TGATTTGGACATAAATAAATCAAAGACAGCTCAGGGAAAGATTTGAATACCTTACCCAGCTGCG
TGACAAACTCCCAATCATCAACAAGTTGCTTTTTTAGCGTTGAAGGAAAATGTGACATGAAGAG
ACTCTCAGATGATTTTCTTTCTTTCTCCTGGATCAACCAGGGCAGAGTTGTCATTATGTTTACA
AATATACCACAAAACAACTTGATAGATAAAATGATCTACCACATGCTTGCCAAATATAGCTGAA
AGCTTCAAAATGTTAAGTTTGTCAGTCTCCATAACCATAATAGGTAGGTAACGAATTCTCTTCG
CACAATGTAAAACATTAGTTCATAGTTCCAAACTACCAATTTAAATTTAACATGTGTTCTAAAT
TTATCCATACTAACAATTCTTACACAGTTAGATTATTTTTGCTGGTAAGCAAACATCATGTAGT
CCAGAAATCGGATTGTTGTGTAAAGAACTAAACGAAGCACCGAAGCAGCAAGATTTCCTAAAAT
TCATCATTACAATTTTAGAAATGTTGAGAAAATGAAATAGTCATCATCATACAACAAAAGGTCA
AGAACTTTAAGTGTTATACTTATATTGTAAAAAGAGAAGAAAGGTCCATATGGACCATAGAATG
TTCCCATTTTCCACATGTATGATGAAAAATGAACATAACTGCCAAATCATGTACTTCCTCCGTT
TCACAATGTAAGTCATTTTAGCATTTCCTATATTCATATTGATGTTAATGAATCTAGATAGATA
TATATGTCTAGATTCATTGACATCAATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGA
AACGGAGGGAGTAGTACTAGAAATAAAAAGAGAATTAATAAAAAAGTATTATTAGTTCAAAGGA
GCAGAAATATGCTTAATATCAGTAGTTTAGAAATGATATCTCAAAAGGCAAATTGCAGTATCAT
AATTGATGGAAAATGAACTTCATGGAAATCAAATACTTCACAATAAAACATATTTGAAAGTGAG
AGACACCTCAGTCCCACCAGGCTGACTTTTGCGTTTCTTCCCCTTGACTGCAGTTTTAACATCA
CAGAGATCAAATGTAATAAGTATCACACAAATGAGAAGAACCAAGAACTTTGAAAAATGTACGA
GTGAACTTACTAATAATCTTGGTGTCTTCTTTATCAGTTTTTGCATCTGCTGAATGCAATTACA
ATAGGTAAGACATATTTAAGAGGAACAAATTACAAAGTAAGACATAAAATGGAAACCCATCCTT
TGGTGGAAGCATGGGAAAAATTTTGGTATAACCACTATAACAGCATGGGAAATTCCATTCTCAA
TGTAGCAAATAGAGTGGTAGCACCCCATTAAGAATTCAACTTCAAATTGAATGTGTCAGAAACA
AAAATATTTGTTGCAAATAGGAACTTCTATTGCAAATAGGAACTTCTATGTTTTCTTTCCCTTT
GGTTTACCATTTGTCATCATTTCTTATTTCTAGAAGTACAAATAAAATTGCAGTTCAAATTCAA
TAAACAGATAGTTTAACAACTGAAAAGAACATATACAACGTTCTGAGAGTTTTCATGCTGAATT
GGTGTCAAAGCCATGGCAGTTTTCATGATTGGACTGAGAGATAGTTTCGAGGATAAAAAACAGA
AATATGATCATGAGTTCATAACCACACCGATATGAAAAAAGATGAATGGGAAATTTCAGAATGT
CCTATATGCACAGTACCAACGCCCATAACAGTAAGCTACCACGTACTTGTACCAGAAGCTATCA
CAAAATTACTCCAAGATTGGTTCATAACTCCAAACTTCGGAAGAAATATCTCCAAGGGTGAAGT
TTGAGCTTAATCCATCAATGTAAATGATCACAGCATTCAGTTATAACCATCACATATTCACAAT
CTCTTTGCCATTTGGCATTTCTACTCTTTTAAGTACAGATTAAGCACTGCCAGGATGACGCTTC
TATTAGCAAAATACAAAATTTATCATAGAAACATGACACTCACAGCTACAGAACAAATTAAAAA
CAACAATTTGGCAAAATAGTTCCTAGAAAGGAAGCTCCCAGTGGAATAGTCTAGACATGATCCA
ACAGCACAAACATTGATTTAACATACATCTAGCTTGTCATGGATAGAAGTAAAAACTATTGACC
CAGTAAAAAAAGCATGTGTCATCAATTCCAATGGAAAGAAGAGGGAGGCATAAGCTAACCATTA
GAGCCTTTTGGCTTATGCTGCGCTGACCGTCCAGATTTTACGCTTTTGTCAACTACTTGGCTCT
TTTCAAGCTCTTGTTGTTTGCGGATATTTTCGTCGGTCAATTTCAGTAAGCGATCATTTGTGAC
CCATTCATCCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 16915034-16914209(-)
Potential amino acid sequence MSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKKYLEHRTKKDNNWDEWVTNDRLLKL
TDENIRKQQELEKSQVVDKSVKSGRSAQHKPKGSNDAKTDKEDTKIIIKGKKRKSQPGGTEEKE
RKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKKYLEHRTKKDNNWDEWV
TNDRLLKLTDENIRKQQELEKSQVVDKSVKSGRSAQHKPKGSNDAKTDKEDTKIIIKGKKRKSQ
PGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKKYLEHRTKK
DNNWDEWVTNDRLLKLTDENIRKQQELEKSQVVDKSVKSGRSAQHKPKGSNDAKTDKEDTKIII
KGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDILKK
YLEHRTKKDN(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021