Detail information of BGIOSGA032119_circ_ig.1


General Information
CircRNA Name BGIOSGA032119_circ_ig.1
ID in PlantcircBase osi_circ_008865
Alias Chr10:11453005_11454064(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 8091778-8092845  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032119_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTATACCTCCGCAACAAGCTCGACGGCTTCCGCGACGACATCGAGCGCGTCATCCCCGTCT
TCGACATCTACTCCGTCGACCCGTTGCAGCTCTCAGgcggcgggcggagacggcgaggcgaggc
agcgacggcggccaggcgagcgtggcggctgaggacgcgaagcggcggcgaggaagggcggctg
ggtggcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGGCGGGCGGAGACGGCGAGGCGAGGCAGCGACGGCGGCCAGGCGAGCGTGGCGGCTGAGGAC
GCGAAGCGGCGGCGAGGAAGGGCGGCTGGGTGGCGGGCGCGAGCGGCGGCTGGGTGGCGAGCGG
CGGCGGCTCGAGGCGTGCGACATGCGGTGACGGGCGGACGCAGAGCTAGGGGCCGTGCGACCGG
CGGTGATGGGTGTACGCGGAGGCGCCCTGGCGGAGCTCGCTCGGACGGCCGATACGGGGGCGGA
GGCGGAGCGTGCGTCGGTGGCGGAAGAGAAGGGGGAGCGAGCGGCCGGGAGCCTGCTGCCCCAA
GCTCCGTCCGCACTGAGGAGGCGAGCGTGGTCGGCGTAGGCGGTTGGCGAGGTGAGGACGGTGG
CGCGCGCGGGGAGGGGGGGGGGCGAAGGACGGCGGCGGCCGGCGTAGAGGCGGAGGCTGACCAG
GCGCGCGGTGGGCGGCGGGCTCCTCCACGTCGTGGGCGCGCGGGAACACGCGGTGGGCCACTGC
CGCCACCGTGGGCTCCTCGTCGTTGGCGCGCGGTGGGCCGACGCGCGGTGGGCCACCGCAGCCA
CCACAGGCTCCTCCTCGTCGGCGCGCGGTGGGCGGACGCGCGGTGGGCTCACCGCCGACCGGAG
TCGTGCCCGTGGCCGCTCACACCGCCGCTCGTCTTCAACCGGCCGGCCCCCAACCCCGTAGGCC
CGACTCCGCGCGCTGAGTGCGCCGCCGTGCGCCGTGGTGCGCGCCGCCGCGAGGGATTGTGCCC
GACCGCCCACCCCCGCCCCCGCACGCACGCAGGTGGGGGACGCGGAGCGNCGNCCGCGNCCGCG
GCCATGACGAGCAGCCGCCCCTGGCGCGGGGACGGATGGAGGCGGGTGCGGGCGACGGCGCGGG
ATGCGGAGACGGAGGTGGAGGCGGCGGCTGGCTCCCGTGTTCCGCTTCTACCCGACGGAGGAGG
AGCTGATATGCTTATACCTCCGCAACAAGCTCGACGGCTTCCGCGACGACATCGAGCGCGTCAT
CCCCGTCTTCGACATCTACTCCGTCGACCCGTTGCAGCTCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021