Detail information of AT3G14570_circ_g.7


General Information
CircRNA Name AT3G14570_circ_g.7
ID in PlantcircBase ath_circ_021767
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4899609-4900204  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G14570
Parent gene annotation Putative callose synthase 8
Parent gene strand +
Alternative splicing AT3G14570_circ_g.6 AT3G14570_circ_g.8 AT3G14570_circ_g.9
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14570.2:3
AT3G14570.1:3
AT3G14570.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGGACCACCTAACATTGGAGAGGGAAAGCCTGAGAATCAAAATCACGCCATAGTTTTCACT
CGAGGTGAAGCACTTCAGACGATCGACATGAACCAAatattcttgaaggatacaaggacgtgga
acgaagtaacagacctttagccgcacaacttgatgcattggcagatatgaaattcacgtatgtt
gtttcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATTCTTGAAGGATACAAGGACGTGGAACGAAGTAACAGACCTTTAGCCGCACAACTTGATGC
ATTGGCAGATATGAAATTCACGTATGTTGTTTCTTGCCAAATGTTTGGAGCCCAAAAATCATCT
GGGGATCCTCACGCGCAGGATATACTTGACCTGATGATAAAGTAAGCTTTTAAAATTGTACATG
ATCTCAGTTAGATTTAGTAGCCAAAGTTGTACATGCTTCCCTAAAGCACTGTTACATGACTGTT
GCACTTAGGTATCCATCTCTCCGTGTTGCATACGTTGAGGAGAGGGAAGAAATCGTGTTGGATG
TTCCAAAGAAGGTTTACTACTCTATATTGGTAAAAGCTGTTAACGGTTTCGATCAGGTATCAAT
AACTTTCCTACAATGCTTGATAATTTGATGTACAAGTTGAACTGTAAAATCATAGTAACAGTCG
ATGACCAAACTTGATTTTGATAATCTAGGAAATTTACCGTGTCAAACTTCCTGGACCACCTAAC
ATTGGAGAGGGAAAGCCTGAGAATCAAAATCACGCCATAGTTTTCACTCGAGGTGAAGCACTTC
AGACGATCGACATGAACCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.184054503
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017