Detail information of AAAA02041104.1_circ_ig.1


General Information
CircRNA Name AAAA02041104.1_circ_ig.1
ID in PlantcircBase osi_circ_019004
Alias Chr03:252943_265651(MH63RS2)
Organism Oryza sativa ssp. indica
Position chrAAAA02041104.1: 1-4449  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GA-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCCTTCTCGAGCTCGAGGCGAGGGTATGGAGGAGGCAAGCACAGGGTACCGATGGAGACCT
AGCAGCTCGAGTTAGCAGATCCGCAGGCCCACGAAAgccgacatattcaccgcctccggtcgca
cctcgccgccgctgccgcgccgcgccaacaccgccgtcggcttcgccgtgccttgccgctgccc
gtccgcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGACATATTCACCGCCTCCGGTCGCACCTCGCCGCCGCTGCCGCGCCGCGCCAACACCGCCG
TCGGCTTCGCCGTGCCTTGCCGCTGCCCGTCCGCCTCTCCTTTTCCACTCGCACCCCTTGGAAC
ACCATTCCCACCACAAACCCGAGCCCCACCACTAACTGCCGCCAACCGGCCGCCTCTTGCCGCC
ATCCCCATCTACCTCACGCCGCGCCACCGCCTCCACCGCATTCGCTGCATCCCACCGCCCCTCG
GCCGTGGCTCCGCCGTGGTCGGGCGTCATCGGAACGCCGTTCTCGTCGCCTCCCGTGCCGACCG
CCGCCATCCTTTCCGCCGCCGGTCGCCTCTCCGTGGTCGTCTCGCCGTCGCCACCCTCGGTGAG
CACTCCTCTCCCCTCCCTCTTTCTCCCCTTGGCCGGCCGCCTCCCGTGCTTGCGCGCGCCGTGC
CGCCGCCGCCGGTGGCCGCCCTGCCCGTGTGCCGCCGTCACTTCGGTCCCGGCCGCCGCCGCCG
CCAGCTTTGTGTGAGCGCTGGTCAGGCCGCGCCGTCCGGCTGTCCCCAGCCGTCCGATCGGCCT
TGGCCGATCTGGGCCGTCCACGTGGTGGACGCGCACCCGAGGCCACGTGTGGACCATTGTCACC
GTGCTGCCTCCCCCTTTGACTCGCTGACATGTGGAGCCCGCGTGTCGGCGCCGGCCGCCCTTTG
CTGACGTCAGCGAGGTCCTTTTCCTTTGTAAAAATAAATAATAATTGCGCAATAGAGCGAGTTT
AATTATAGAAATCCATTAAAATGGCTCAAAACTTCTAAAATTCATATCTAATTCATTCGAACTC
CGAATTGAGCCATTCAACTTGCAAAATTCATCTAAAATTGAGCTCTACATGTTTGTTTAGTTTT
TATGTACTGTTTCCTTTGGTTTTTATTAGAGTTTTTCCTCGTTTTGCGTGCCAGCGTGTAGTTT
CCGTCGTTTCGGAAGTCCGCGGTCGCGAGGAAAAGAGTTCGGAAGATCAAAGTGAAGAAGCAAG
GCAAGTCGCACATTTCCCCTTGAGCATGTTGATCCTAATTTATAAATGTTTTACCGTTTGCAAA
TAAATATGCATGTTTTGCTAATTACATGGGATCAGGGTTTACCTATCTGCTCGCTTGTGCCATG
TTTACTTGATATCTGTCCTTTGTCAACCTTGGGTGATAAATCGACTAGCTTGTGTTACTTATGT
GACCTAGCTAGAACTTTATGCTTAGCCATGCTTAATTACCACTAGCTCAGTCGATGGGATAATT
GCAGTATTAGACATTCTAGTATCTTGTTGAGCTGCGTGCTCGAGACATCTGGCCATGTTACATG
GTCATAATTATCCAACTAAAATGCGACTGAATGGTGGGCTGTGGGTGCATGGTTTTGTGAGTCG
CACCCATGGCAATTAAGGACCGGTTCACGGGAAACCCTGGAAGACTTACAGCGCTTGCCACAAG
CGGGAATGGGTAACTGCTTGATCTGAAGTATAGCTCGACCCTTTCCTAGGCACCGGTGGCGAGG
GTGGGCGTGATGGAGTTGGGTCGGCCGGGGTGTCCGGTTGTCCAGCTGCCGGATTCACCGCGGC
GCAAGAGGGGACCGCCCACTGCCTTTTGAGGGGTGGGGGTGAAACCTTAGCGTGGTGTGGATGG
TTAGGGGAGGGTTATGCGAAGGGTCTCGTCACAATCACTCGACATGGTGACGTGTGCATCATGG
GCACATGATGACGCGGTGACATGTTGGTGGGTTGTGTCTTGTGGGTACAGTTGTGCACCTCTGG
CCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGATCGACAGATTCACCGTGAT
TAGTCTCACACCTAATAAATCGACCCAATGCACTGTAGTCCAGGTGGGTTGGTTGGGCCTGTTC
AACGTGGTGTAGCGTTGATCAGTGGAGATTTTAATGTTACTTTAATTATTCAACAGTTTTACTG
GTTGCTAAATAAAATGTTTTACAACCGCCTTTATGCAAATAGCCGCAAACCCCTCCTTGTATCC
CCTTGCACGTCTGCATCATTGGTGTGGCTTGCTGAGTACGGTGGTTGTACTCAGCCTTGCTATT
ATTCCCCCTTTTCAGAAGTGTAGTGCTTCTGAGCTGAAGATGGAGTTAGAGGACCAAGGCTCAG
ACCCCAGTTGAGTTTTGCCTGTGGAGTGGAGCTGAAGCCCCGCTAGGATCGCCCTTTTCCGCTG
CTGCTGCTTTTGTTTCGGTGTGAGGACTAAGTGCCTCTTCTGTAAGTATTTTACGCTTTATTTA
CGTTTGGAACTGCATATTACTTGTCGTTTTGTGTACCCTGGCTGGTCCTGGACAGGGATTTAAT
ACACAAAATAGTCTGGAAATTTGGGCTAAATTTCTGGGTGTGACAGGAGCGCAACAACACCGCT
GAAACCACTGCAATTAATTAAATGGACTAGAATTAGCTACAGCTAGGGATTTTACTTTTCCAAT
GCCCCTAAGAGATGTGGCAAAGAAAACAGAACACCCCTAAGAGATGTGGCAAAAAACAAAACGT
GGGTAGGCAAAGAAATCACTACAAAGAGGAACAAGAGAATTCAAAACAACAGAAAACAAATAGA
TTTTATACATCACAGGAATCAGAGACTTGACAGACTCATATCACAAGAAAAATCAAGATCTTCT
TTTACTCATTCTCATCAATCCATAGTTGTAATAATCTTTACATAATTCAAGAACAGGTGATAGA
CCAGGTTTAATCTTATCGAATATGGGCTGAACCCAGAGTTCTGAGATAGCTAAACATACAGATT
GAGAAATTTTCTGCCGGATAGCAATTTAAAAAGAGGAATGAACTAGATTCGGTACATCTAAGCC
TGCTAATAGACTGAGATCCAGACCAAAACCGCCCCAGTTCACTTGTCTCTATAGTACACTTCTA
AACCAATCCAATTCAATTCATAGTTTGCAGAAACCAAACCAATCCAATCCACTCACAGAGCAAG
CCCAAACCAATCCAAACCAAGTGCAGACAAATGGATTCAACCAATTCTCAACCCATTTCCAACC
CAAAGGAAATCCACAATATTACTCTGAACACCAACAGGCATCGTCATCTTCTTCCTCCTCCCTC
CTTCGGTCAGCTCCGGGAGGATGAGCAGCTTGCAGAGGGCATCAATGGAGGATGAGCAGCTTGC
AGAGCTCGTACAGGGTCGTGGGAGCATCTGGCGCTCCCGTGCGCCACATCGTCGTCGCCGCCGC
AGCGAAGGAGCCTCACCAGCGCTGGGATGCCGCGACCACCGCGAGCGCGTTCACCGACTCACCG
TCGCGAGGCTCGTGAGCACTACAGCCGCGACCACCACGGCTGCACCGCCATAGGACTTCTCCCC
CAAGTCCGCACCACCGCACCGCCATTGTCCGCCACAAGCCCCACGTTGCCCCGCCCTTCTCCCC
CATCATGGCGGCCACGGCCATGGCCTTCGATGCCGCCGCTGTTGCTGCGGGCAGCCAGAAGATC
CGAAGCCATGGTTGATTTTTTGGGGACTTTGTGAAGGGAGAATTCAAGGTTTGCCGGAGGAGGG
AGAGGAAGGTAGCAAGCCACCTGCGACGAAGTTGAGCTAGCGATGGCGGCGATGTGGTTGTCGA
CTTCTCAGGGAGACGATGGGATTGGGGCCAATCCAGTGGATACCCATGGGTTGAATCCAATCTG
GGACCAAACTTTTGCAGCCAAAACTAAACGAATCTAAACCATTTCCCATCTCCATCCAAACCAG
TCCAATCCATCAGGTGCAGCAACCCATTTCCACCCGCCCAAAGCTAACCCACACTGAAATCCAA
CCCACTATATCCACTTAAACACAGTCCATTAGCAGGCTTAGGTACATCATCATAAAGAAATCAT
GTAGTTCTTTTTATTTTTCCTCATTCTCAATCCATACTTGTAATAATGTTTAAAAACAATTCAA
GGACAGGAGATAGACCAGGTCTAATCCTACAAAATATGAATTAAATAAAAGGTTCTGAGATAGC
TGAACATACAGAAGATAGCAATACTCTGGAGTTTTTCTGCCAGTCTCCACTGCCGTGCAGAAAG
CTCTCTTCCCAGACATCTCCTCTCAGGAAAAAACCAAAGCCTTTGCAGTGAGAAACCCTCGGTT
CTTGATCTGAGATGATAAAAAAAAAAGCGGGCCTTAGAGCCACCGCGAACACGGAAATGATCCA
AGTGAAGTGACGAGGGAATGCAATTTACCTTAACGCGGGGAAGTTGGGGCAAGGGGGCAGGCGT
CGGGGCCGGCTGAGGGAGACGTCCTTGGCCGGAGTAGCCGAGCGCGAGCAGCAGCCGCCGCCCC
CCCTTCTCGAGCTCGAGGCGAGGGTATGGAGGAGGCAAGCACAGGGTACCGATGGAGACCTAGC
AGCTCGAGTTAGCAGATCCGCAGGCCCACGAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021