Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17040_circ_g.1 |
ID in PlantcircBase | ath_circ_002996 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5827183-5827779 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G17040 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17040.3:2 AT1G17040.2:2 AT1G17040.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.292054197 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5827196-5827776(+) |
Potential amino acid sequence |
MARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQDFDLLRRICGCYEY ITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAERSLQNQVPGTFILRFPT SRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDYQIKMARKLIAEGTNAWNLISRNYRHVHW DNVVIEIEEHFMRIAKCSSRSLTHQDFDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLI NGMWRSASPKWIEGFVTKEEAERSLQNQVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHH RLLTINHICDYQIKMARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQ DFDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAERSL QNQVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDYQIKMARKLIAEGTN AWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQDFDLLRRICGCYEYITQENFETMWC WLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAERSLQNQVPGTFILRFPTSRSWPHPDAGS VVVTYVGHDLVIHHRLLTINHIC(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |