Detail information of BGIOSGA016956_circ_g.1


General Information
CircRNA Name BGIOSGA016956_circ_g.1
ID in PlantcircBase osi_circ_014691
Alias Chr04:29501682_29502706(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27685901-27686925  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016956
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA016956-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTAAACACGGATGGTCAATAAATGAATTTGGGGATTTGACAAGAGGTGCAGAAAGTACTGGC
AAAGTCTATAACCCATCGGATTATAGATCCAATAAGgacggaattcatggtggatatgaaatgt
gatggttgtgtgacagcagtgaaaaacaagttccaaactcttgaaggtttgtcaccatgtaatt
ttagtatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGGAATTCATGGTGGATATGAAATGTGATGGTTGTGTGACAGCAGTGAAAAACAAGTTCCAA
ACTCTTGAAGGTTTGTCACCATGTAATTTTAGTATTCTTTTGAAATACAGTTTTGTTTATCGTT
TGCCTCTGGTTTATGAAGACTGCCTATTACTACAGGAATTAAAGACATTGAGGTGGACCTTAAT
AATCAAGTTGTTAGGGTTCTTGGATCTCTCCCAGTGAACACAATGCTGGATACTCTGCACCAAA
CAGGCCGAGATGCTCGTCTAATTGGGCAAGGGAACCCAAATGGTGTGTGTTAATTTCTATATTT
TATATGACAATATTTTATATTAGCCTTAATATCAGCTGGTATCATTGCTTTTTAATCATGTGGT
ACTTGATTCTGATGTTCAGTTATAGGAAATTCAGAGATCAGTCGTGTGTAAATTAATGAATTGT
CATACTGGTTCTAGTCAGCAAATGTAGGCATTATATATCTGTCATCTCTTTTGTACTTATATAA
TGCATCTGAAATCTAAATAAGATGCTTGATTTACTTCAACTGTGATGCTGACTTATATACATCT
TTAAAATGCATTTAATCTGTACCAGGTCCTCCTGAACTCATTTCTAGTTATTGAAAAAATAATA
ATAATCAGTATTTCCACTATAGAAAGATACTGCACAAAACAAACTTTCTGATTGCTGGCATGTT
TATTGTATTTTCCTGAGGCATGATTGCTGGTCAGTTTTTTGTTTATGTGACGCACACCTATTCT
ATTATGAGAATTAATTCCATGCACTAACTTCTGCAGATTTTTTAGTATCTGCTGCTGTAGCTGA
GTTCAAAGGGCCTGTTATATTTGGTGTTGTTCGTCTGGCTCAAGTTAATATGGAATTGGCTATA
GTTGAAGCCACTTTTAGTGGTCTATCACCTGGTAAACACGGATGGTCAATAAATGAATTTGGGG
ATTTGACAAGAGGTGCAGAAAGTACTGGCAAAGTCTATAACCCATCGGATTATAGATCCAATAA
G
Conservation Information
Conserved circRNAs osa_circ_024961
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021