CircRNA Name |
AT1G17110_circ_g.7 |
ID in PlantcircBase |
ath_circ_003008 |
Alias |
At_ciR2447 |
Organism |
Arabidpsis thaliana |
Position |
chr1: 5848906-5849299 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene |
AT1G17110 |
Parent gene annotation |
Ubiquitin-specific protease 15 |
Parent gene strand |
- |
Alternative splicing |
AT1G17110_circ_g.2 AT1G17110_circ_g.3 AT1G17110_circ_g.4 AT1G17110_circ_g.5 AT1G17110_circ_g.6 AT1G17110_circ_g.8 |
Support reads |
3/41 |
Tissues |
leaf/inflorescences, whole_plant |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
CT-AC
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT1G17110.1:1 AT1G17110.3:1 AT1G17110.2:1
|