Detail information of BGIOSGA021015_circ_g.1


General Information
CircRNA Name BGIOSGA021015_circ_g.1
ID in PlantcircBase osi_circ_016348
Alias Chr06:22342079_22342900(MH63RS2), Chr06:22700491_22701338(ZS97RS2), Chr06:22342079_22342900(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 22669985-22670832  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ, CIRI2, CIRCexplorer2, CIRI2, find_circ
Parent gene BGIOSGA021015
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021015_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA021015-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTGCCTCAGGTTTGCAGTAGTCTAGAAAATAGTAGTCATATGGAAGTTGTGTCTTCGTAGA
CGAAAGCTTGTTGACTTTAACTTGAAGCTCATCATCcctgctaggaatcacatggaagccaaca
atacgagcatcaggagagtttgggtcttcatgatacaagactttaaaacttaagtgattgttga
tataatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTAGGAATCACATGGAAGCCAACAATACGAGCATCAGGAGAGTTTGGGTCTTCATGATAC
AAGACTTTAAAACTTAAGTGATTGTTGATATAATACTTGTCATCCTTGAGCTGGCAATATTATA
TGCAAACATCAAACTGATGAAGGCCCATTGATCAGCATTTGAAGTTTAAACAACTGACTTAGCG
AGATACTCACCTTATAACCAACTCGGTAACCATGCTCAAAGCTTGGTGTTTGGCTTCCTTCCCT
TGTTTGTCTAGGCACCACAACTGGGAGATTATCCAAAATCCTGAGAAAAAAAGGTTATTAAGAG
GGAAAAAAGTTCAGTTGCTGTATTTTGAATGTATCTGCTGAACATATAGTACAATATATCAGCT
GGCTAGATAGCTGATTAGAAATAACAAGGTGAAAATTTATAGCATACATGTTCACTCGATACTC
ATCGTCAATCTTTTCTTTGAAATTCTTTGCAGCTTCTGGAGAAAGCTTTGATCGACAAACAACC
TTGCAGGTCTCATCCCTCCTCATCTTGAACTACAAGAGTTGAAAAAGTTAAACTATAGCTAATG
AACAAACAGTTTTGCATAGTAAGTGGCAAAGCTCCACTGCTCCCTAGCCCTACAAGCAGCATCA
TCTTGTGTTGAAACTAGAGCAATTAGAAAAGTAATAGCCTTACATTATAGACAGAGTTTTCAAT
GCGATCCCCACGAAGGACTTCCCCTAAGTTCTCAGCACTATTCTTAATTGCCTCAGGTTTGCAG
TAGTCTAGAAAATAGTAGTCATATGGAAGTTGTGTCTTCGTAGACGAAAGCTTGTTGACTTTAA
CTTGAAGCTCATCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021