Detail information of Os12g0163400_circ_g.1


General Information
CircRNA Name Os12g0163400_circ_g.1
ID in PlantcircBase osa_circ_010554
Alias NA
Organism Oryza sativa
Position chr12: 3213977-3216789  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0163400
Parent gene annotation Tubby family protein. (Os12t0163400-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACAACAGGATCTTTCAGTGTCGTAGAACCAATTTCCCCCAAATAATCATGCCATGTAGCGAG
TACAAAAACAAACACAATACTAGGATAAAGGCTTACataacagaaactaaaaaagtatgctggt
gggagggatatatgcagtaagaaattagctcacaacaggacgaaatagctgcaaaagggggggg
ggggtaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2813
Transcript exons: 3213977-3216789
ATAACAGAAACTAAAAAAGTATGCTGGTGGGAGGGATATATGCAGTAAGAAATTAGCTCACAAC
AGGACGAAATAGCTGCAAAAGGGGGGGGGGGGTAACAAAGGAGGTGGTATGGTATGAATATCCA
TATGCACAAATGATTAGCACGCGTGGGAATTGCAATAATTAAGCAAGATCAGTATGCAATAATT
AAACTAATACCAAACAAGCTGTACGGTCATACATAACTTATATGCCTCAATAACTCATACATAC
TGGCTAACAGTGCAAATCATACATTAACTTTTGGTTGATATTTATGCAAGGAGAAATACTGTCA
TGTATAATATATTGTTGCTTATATAAAGAATAGATACCACATACAAGTCCCTCACAGGGAATGC
TAGCGGTGATGGAGCGTAAATGATTATGCCACATATGCAAGCTATACATTAATCTCTGGTTGTT
GTTTATGCAAGGTATCATGCATTCTTGCTTATATAAACAATAGATACTCATACAAGCCCCTCAC
AGGAAGTGCTAGCTGTGATGCAGTCTAAATAATAAGGGAAAATTGGTCCTATGACATCCAAAGA
TCCCATTCATAGAAATTTACCATTGAAAGATCTTGGTACACTTTAATATTATCGAAAGATTACG
TCGTTCAGTTTTTAACCATTGCATCCCCTTCCATTAGTGTTTACCGGATTTTCCCCCTTTTTTG
CACTCAAAACTTACACTTATGCCCATTAGACATACGTCTTGAGCTTCTTGAACCAGATTGTCAC
CAGCACCGCTGCAGTGCCGCCTGCTGTGCCACCCATATTCTCAAGCTCTAGTGTGTATCTTGTT
GATTTGGATTTGCAAGGTTTTGGAATGCAAGTCACAGCCATTCACGTTGCTGTCAGGGCCACAG
TGGTGGGTGGCATGGAGGACCTGGTGAAACTGATGAGGAAGCACCTCAAGACGTTGCACAGCTG
CAGCGTCGGGTTGCAGGATGTGCATCAGCACGAGCTCCTATCAGGCTGTCACGACCCTAGTTAT
TGGAACCGGACCGGACCAGCAGTTGGACCGGAAAAAACCGGAACCGGAGCCTCCGCCGGTCTGG
TCCAACTAAAAGACCGGCTGTGCAATCGGCCCAGTATAAACCGGTTGGGCCGCCCGGTTTTGTA
GAAAAACCGCCAAGAAAACCGGATTTCAACCGCCCGGTCTGCATTGCGCGCGGTCACCTCGGCA
GCTGGAGAGGGAAAAATGTGAGAAAAAGGGGCACAGGTGGGATTCGATCCCAGTACCTCATGCA
TGGAACTGAACCAACCAACCACCGGGCTATGATACACCTTGTGTTTTGAAGGAATAAACTATAT
ATTTACATTAGATTGAACCGCTTCAAACCAGTGGTTCAACCGGTTGAACCAACAAACCATTGAA
CCGAGGGCATCGCCGGTTTAATGACCGGTCCGGTCTCAATAACTATGGTCACGACTGCTCTGCC
ACGATGCTAGCGCTGCACCATTCAAGAAGGCAGCAACTGTCCATGCCTGGTGCAAGCAGGCCAA
CATGCTCACCGGTGACAAATTTGAAATGACTAACGAAATGTGCTGAAATGCATATCAGCTACAG
CTTCAATCAACACGATTCCCATCTCGTTGGCAAACGGCAATCATCAAGCAGGCCCAAATAACTC
AGGGATGCTATGTGCGGGCTCTTCTGATTTCAGAAATTTACAAGCACCAATTGCCAGCCAAATT
AAAATCCAAATCAGCCTGAATTGCAGCTCACAACGACCATGGCATGATAGTTCTCACTTCTCAG
ATCCTTTCGTGATGCAGCCTTGAAGCCATGACAGTTGAGCAGCGAAAATATCTATGTTGATGAG
GCCTCAATTTAGAGAAAAAAGGAAGGCATAGAAAGGATTCAGAGGAGAAGCATGCTGTATCAAG
AGGAGAAGAGAGCGCAATGGAAAGGGCGGCCATCACGGAGGCTGGCACTGTAGTTTCGGCGCAT
GGAAGACAAAGCCAAACGAAAATCCAAATCAGCCTGAATTGCAGCACACAACGACCATGGCATG
ATAGTTCTCGCTTCTCAGATCCTTTCGTGATGCAGCCTTGAAGCCATGACAGTTGAGCAGCGAA
AATATCTATGTTGATGAGACCTCAATTTAGAGAAAAAAGGAAGGCATAGAAAGGATTCAGAGGA
GAAGCATGCTGTATCAAGAGGAGAAGAGAGCGCAATGGAAAGGGCGGCCATCACGGGGGCTGGC
ACTGTAGTTTCGGCGCATGGAAGACAAAGCCAAACGAAAATCCAAATCAGCCTGAATTGCAGCA
CACAACGACCATGGCATGATAGTTCTCACTTCTCAGATCCTTTCGTGATGCAGCCTTGAAGCCA
TGACAGTTGAGCAGCAAAAATGTCTAAGTTGATGAGGCCTCGATTTAGAGAAAAAAAGGAGGCA
TAGAAAGGATTCAGAGGAGAAGCGCGCTGTATCAAGAGGAGAAGAGAGCGCAATGGAAAGGGCG
GCCATCACGGGGGCTGGCGCTGTAGTTTCGGCGCAAGGAAGACAAAGCCAAATGAAAGGGTTTA
GTGCGAGTGTGTCATGTGGCACTTATGTCGTTGCTAGAGGACAAATGAGTCCGTTTTAATGGCA
ACCTATTAAATTCAGATGGAATGGTATAAAAGTGAACGGCCTAACTCGATGATATTAAAGTGTA
TAGAGATCATTAGATAGCAAATTACTCACAACAGGATCTTTCAGTGTCGTAGAACCAATTTCCC
CCAAATAATCATGCCATGTAGCGAGTACAAAAACAAACACAATACTAGGATAAAGGCTTAC

Genomic sequence ATAACAGAAACTAAAAAAGTATGCTGGTGGGAGGGATATATGCAGTAAGAAATTAGCTCACAAC
AGGACGAAATAGCTGCAAAAGGGGGGGGGGGGTAACAAAGGAGGTGGTATGGTATGAATATCCA
TATGCACAAATGATTAGCACGCGTGGGAATTGCAATAATTAAGCAAGATCAGTATGCAATAATT
AAACTAATACCAAACAAGCTGTACGGTCATACATAACTTATATGCCTCAATAACTCATACATAC
TGGCTAACAGTGCAAATCATACATTAACTTTTGGTTGATATTTATGCAAGGAGAAATACTGTCA
TGTATAATATATTGTTGCTTATATAAAGAATAGATACCACATACAAGTCCCTCACAGGGAATGC
TAGCGGTGATGGAGCGTAAATGATTATGCCACATATGCAAGCTATACATTAATCTCTGGTTGTT
GTTTATGCAAGGTATCATGCATTCTTGCTTATATAAACAATAGATACTCATACAAGCCCCTCAC
AGGAAGTGCTAGCTGTGATGCAGTCTAAATAATAAGGGAAAATTGGTCCTATGACATCCAAAGA
TCCCATTCATAGAAATTTACCATTGAAAGATCTTGGTACACTTTAATATTATCGAAAGATTACG
TCGTTCAGTTTTTAACCATTGCATCCCCTTCCATTAGTGTTTACCGGATTTTCCCCCTTTTTTG
CACTCAAAACTTACACTTATGCCCATTAGACATACGTCTTGAGCTTCTTGAACCAGATTGTCAC
CAGCACCGCTGCAGTGCCGCCTGCTGTGCCACCCATATTCTCAAGCTCTAGTGTGTATCTTGTT
GATTTGGATTTGCAAGGTTTTGGAATGCAAGTCACAGCCATTCACGTTGCTGTCAGGGCCACAG
TGGTGGGTGGCATGGAGGACCTGGTGAAACTGATGAGGAAGCACCTCAAGACGTTGCACAGCTG
CAGCGTCGGGTTGCAGGATGTGCATCAGCACGAGCTCCTATCAGGCTGTCACGACCCTAGTTAT
TGGAACCGGACCGGACCAGCAGTTGGACCGGAAAAAACCGGAACCGGAGCCTCCGCCGGTCTGG
TCCAACTAAAAGACCGGCTGTGCAATCGGCCCAGTATAAACCGGTTGGGCCGCCCGGTTTTGTA
GAAAAACCGCCAAGAAAACCGGATTTCAACCGCCCGGTCTGCATTGCGCGCGGTCACCTCGGCA
GCTGGAGAGGGAAAAATGTGAGAAAAAGGGGCACAGGTGGGATTCGATCCCAGTACCTCATGCA
TGGAACTGAACCAACCAACCACCGGGCTATGATACACCTTGTGTTTTGAAGGAATAAACTATAT
ATTTACATTAGATTGAACCGCTTCAAACCAGTGGTTCAACCGGTTGAACCAACAAACCATTGAA
CCGAGGGCATCGCCGGTTTAATGACCGGTCCGGTCTCAATAACTATGGTCACGACTGCTCTGCC
ACGATGCTAGCGCTGCACCATTCAAGAAGGCAGCAACTGTCCATGCCTGGTGCAAGCAGGCCAA
CATGCTCACCGGTGACAAATTTGAAATGACTAACGAAATGTGCTGAAATGCATATCAGCTACAG
CTTCAATCAACACGATTCCCATCTCGTTGGCAAACGGCAATCATCAAGCAGGCCCAAATAACTC
AGGGATGCTATGTGCGGGCTCTTCTGATTTCAGAAATTTACAAGCACCAATTGCCAGCCAAATT
AAAATCCAAATCAGCCTGAATTGCAGCTCACAACGACCATGGCATGATAGTTCTCACTTCTCAG
ATCCTTTCGTGATGCAGCCTTGAAGCCATGACAGTTGAGCAGCGAAAATATCTATGTTGATGAG
GCCTCAATTTAGAGAAAAAAGGAAGGCATAGAAAGGATTCAGAGGAGAAGCATGCTGTATCAAG
AGGAGAAGAGAGCGCAATGGAAAGGGCGGCCATCACGGAGGCTGGCACTGTAGTTTCGGCGCAT
GGAAGACAAAGCCAAACGAAAATCCAAATCAGCCTGAATTGCAGCACACAACGACCATGGCATG
ATAGTTCTCGCTTCTCAGATCCTTTCGTGATGCAGCCTTGAAGCCATGACAGTTGAGCAGCGAA
AATATCTATGTTGATGAGACCTCAATTTAGAGAAAAAAGGAAGGCATAGAAAGGATTCAGAGGA
GAAGCATGCTGTATCAAGAGGAGAAGAGAGCGCAATGGAAAGGGCGGCCATCACGGGGGCTGGC
ACTGTAGTTTCGGCGCATGGAAGACAAAGCCAAACGAAAATCCAAATCAGCCTGAATTGCAGCA
CACAACGACCATGGCATGATAGTTCTCACTTCTCAGATCCTTTCGTGATGCAGCCTTGAAGCCA
TGACAGTTGAGCAGCAAAAATGTCTAAGTTGATGAGGCCTCGATTTAGAGAAAAAAAGGAGGCA
TAGAAAGGATTCAGAGGAGAAGCGCGCTGTATCAAGAGGAGAAGAGAGCGCAATGGAAAGGGCG
GCCATCACGGGGGCTGGCGCTGTAGTTTCGGCGCAAGGAAGACAAAGCCAAATGAAAGGGTTTA
GTGCGAGTGTGTCATGTGGCACTTATGTCGTTGCTAGAGGACAAATGAGTCCGTTTTAATGGCA
ACCTATTAAATTCAGATGGAATGGTATAAAAGTGAACGGCCTAACTCGATGATATTAAAGTGTA
TAGAGATCATTAGATAGCAAATTACTCACAACAGGATCTTTCAGTGTCGTAGAACCAATTTCCC
CCAAATAATCATGCCATGTAGCGAGTACAAAAACAAACACAATACTAGGATAAAGGCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.195649627
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017