Detail information of Os11g0182400_circ_g.2


General Information
CircRNA Name Os11g0182400_circ_g.2
ID in PlantcircBase osa_circ_008707
Alias Os_ciR7225
Organism Oryza sativa
Position chr11: 4135698-4139292  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0182400
Parent gene annotation WD40/YVTN repeat-like domain containing protein. (Os11t0182400-0
1)
Parent gene strand -
Alternative splicing Os11g0182400_circ_g.3 Os11g0182400_circ_g.4 Os11g0182400_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0182400-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAACTCTTTATTGAAGTATTAGACCCTGAACTTCTTGCTTGTGGATTCCTCTTGTAATATAGA
TCCCTCATCAGATGAGCTGTGTCAATAACTCTATTCctcaagtcccagcagtgcgcataaccag
cagatgagcccgcgaatatcaaatggccacttgtgctgaatgacaagcatcttattgctgaaat
cattagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAGTCCCAGCAGTGCGCATAACCAGCAGATGAGCCCGCGAATATCAAATGGCCACTTGTGC
TGAATGACAAGCATCTTATTGCTGAAATCATTAGAAAACATGAAATTAGCTTAGTATTGATTAA
GCTCACAGCACTAAATATCTAACATACTGAAATGGATCATCATTGGTGCCTTTTATTTACAAAG
ATTTAACAAGGACAAATACTGCCAGTAAAATCTTAGATATAGTTCTTCATCGAACTGAGACGAG
ATTATAAGGCATGATTTTTATAAAGAACAACATAACTAAAGAAATTGCCAAACAAGAAAAAAAG
AGTTGGATAAGATTGTCACTCAGCATCCTGCCATTTTTCTAGAACAATGCTATTCTTTTTAATG
GAAGCCAACCTTTTAGAGGGAAGAAAGGGGACACTGCATAACCATGCATTAACTTAATATGCAA
GTCATCATTTCTGTTCAAACTTCTGTTGAACAAGCATTATGCTGCAGGTGTATTATTCTCTTTA
TGGTAAATGAAAATGTTTTTTGTCATGGTATGTCAATTCATTTGGACTTTTTTTTTTTGAAACT
GATACATTTGAACATTTTCAACATGGAAAGAGATGAAGAGACCAAGAACATCCCCAATCCCCAT
CAATCATCAGCAATTGGCAGTCCATCATGCTTATTCAGGATCAGCTGAGGGGTTGGTTACCTGT
TGGTGCAAAAGCTGATTTCAGAACACCTAACTTTTGTCCAGAGGTTTGATCTGCAATAGCTACA
TTTCCAAATGTAGAACCAGCAGCAATGAGCTGGTCATCTGTTATTGTCAAGCATGTCAAGGGAG
AAGAGTGAAGCCTGTATAACACAGTTAAATAGGCATCAGCTGCAGGACATACTAATATAGAATG
CAGAACTGTACATCACAGGGGCAAAATTGTCTCTTTTTTTCTGCATTTGTAATTATTAATCCTT
CAAAAATTTCTTAAATATGTACACTATGTCATTCTCAAAGATCAATTGTATCCAAATAAGTGTT
GCTTCTCAACTTTTCTGCATCCACTAGAGGCCCATATAAATATCAAATTAGATACACCTTTAGA
AGGAAGATTCTAAACCTCAGCACAATCTCATTTGACTTTAAAACTATGTAAAACATTCAAGGGG
AAAAAACTTCATGAGGTGCAGACATGCATTGATAAACAAGACGAAATTATACCAGCTGAAATGG
TTATTAGGTAAGGTTATATACTTATATCAAATTATATAATTCCTCAGAAGTGAACTAAAGCTTA
TATTGCAGTTTGATGATAAGAATCAAACAACTGAAAGGAACCGTATTCATATGTTATGTTTCTG
TGTACTCACCGGTAGATGCTTGAGCAACTCCTGCTGTACATATCATATACAAATGCTCTACCAT
CCTCACAACCAATTATAACCTCTGGATCGGCATAACTGTGGAAAGTGGAAACAAATGAGCATTG
GGGGTTAAAGCTAACAAAATCTTTATCATAAAACGTTTGGACAGCACACGACCCTACGCAATAA
TCCTGTGCCTCTGAGATTACATGCTTTCATGAGCAATTCAGTAATTTCAGTAGTATATGTAACA
TCTAACTTTTCATTTGTTCGAAACAAAAGGCATGTCATTTTACAAACTTAAAGCATGTTCCTCA
CCTCATACATAAGCCACGGTTGAATGAGGCTCCACGAGATTGAAAAATACTTCTCGGCTCACTA
CGTCTCCATATGCAAAGCTGGGAGCTAGTCAAACCTACAATCTTCACAGAGGATTGGAATTTTA
TAACATGTAAATAATAAGTCTATAGATATGGTGTGGTTCATAACTTAAATCAAAGTTGTTTGAA
CCTGGTTTACTGCATCTCCATGATGAATAGAAAAGTTTATACAATATACAACTATTAGAATCAC
CAATTCAGCCAATGTTATTAAGCTGAAGATGATAATATAGAACATCCAAGACTACTTATGTGCA
ACCTAATGCACATAATGGTAAAAATCCCAACCTACAAAGATTTCCAGGACAAAGCACAGCTGGT
GTTTCTAATGAGACCATAACCATCTCCAGTTTTATATGCACACCATTTTCCCATATGTTGACCA
CTATCGTGGGGGGGAAAAATGCACCTACAAGAGTCAGCAACTAAGCAATCATTCTCATTATGCT
TGTTGAATCTCACTAATATATAATCGAATTGCTTCAAATGTTATATTAATAATACTTGTAAGGA
TCAATAGCATAAATAGTCTATTTTGCAGTTTCCATTCACATTCGAAAAAGAAACATAGCACTAA
GGCAAAGGAGATCAAATGCTTATATCTGCACAAATAAGATGTTTAAATATGTGGCTGGAGCTTC
TGACATATAGGTGAGCTACTACAAATAGGCCTTCTTGTACATAGTTACAGAACACTTGGAATTT
CATATGGAACTTTTACTGAAGCAAGAATCAATTATAGCCCTTCCTGTCAAATGCATAAGGACAA
AGCTAGTAGCAGCTAGAAATTAAGAACAGAAGTACTGAAAGCTACCAACATCGATTACCTTATT
TTCATCAAAATCAAAGTTGACCAGCATTTTAGAACTTGGAACAATGTACTCATTCATGTATTTG
CAACTTTCAGCAGACCAAAGTCGGAGAGTCTGGCAAAAATCAAATGCCAAGATGATCAGCATGA
TTATAAGATCTGTGACGGTATTAAACAAAATTAAAAAAAAAAGCAGTAAGCACTAAAAATCTTC
AATCATGCTTTCAATTATCTAAAAACTTCGCAATGTACTCAGGCAGCCATGGTTTCCACAATCA
TGTCATGTCATGTTTCATCTGGCATTCTGCACTACTATAGCATCACCTGAATAGCGAGAGTGGA
AGGCCATTGACCATACCCCTATTTTTTAAAAAACAAATATAAATATAACTTTTTTTTTGTATAC
TACATCACTACATTTCTTTTTGCTAAAAGGACCTACCAAAAAGGTCTAAAGCACAAAAATTATT
ATTGTACTAGTACAAACATTAATTATTTGTGCCTGTTACATCTTACTTTTTTATTTCAAAAAAC
AGCCATTTCACATTGATGAAGGATAATAAGAACGGCACATGATGCAAGGCTCACCTTATCTCCA
ACTCCAGTTAAGATTGAACCACTCTTCATGCGGCATATGGTGGCCCTGAAACAAGAAATAGAAA
ACTGAAAGAAAAAAATGTGGATATTGAGCCACAATCCCAACAGTGCAGCTCCAGAAAAGAAGAT
ACTTGATCAAATCGAACAATATGAAAAAACTAAAAAGAAAATGTTTGAGAACACGAGAACTCTT
TTAGTTGATATAACTAATTCACTATGCACAAGAAACAGCCTAAATACAGAAGCTCAGCATAGTA
CAGGGCTACAGGCTTACTGGTTAGGATGACCAATCCACTGATAAACTTCAGCAGGACCTCTAGA
GAAAGACGATGCATGTTCATCAAGTGCAAGCTCCTTGAAGTAACTCTTTATTGAAGTATTAGAC
CCTGAACTTCTTGCTTGTGGATTCCTCTTGTAATATAGATCCCTCATCAGATGAGCTGTGTCAA
TAACTCTATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.09862599
Functional Information
Coding potential Y
Potential coding position 4135777-4139289(-)
4139266-4135700(-)
Potential amino acid sequence MLVIQHKWPFDIRGLICWLCALLGLEE*(-)
MRDLYYKRNPQARSSGSNTSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSI
LTGVGDKTLRLWSAESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSR
GASFNRGLCMSYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTF
GNVAIADQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRNRVIDTAHLMR
DLYYKRNPQARSSGSNTSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILT
GVGDKTLRLWSAESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGA
SFNRGLCMSYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGN
VAIADQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRNRVIDTAHLMRDL
YYKRNPQARSSGSNTSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGV
GDKTLRLWSAESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGASF
NRGLCMSYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGNVA
IADQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRNRVIDTAHLMRDLYY
KRNPQARSSGSNTSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGVGD
KTLRLWSAESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGASFNR
GLCMSYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGNVAIA
DQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017