Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020978_circ_g.1 |
ID in PlantcircBase | zma_circ_009383 |
Alias | zma_circ_0002570 |
Organism | Zea mays |
Position | chr7: 138433836-138434417 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d020978 |
Parent gene annotation |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d020978_T002:1 Zm00001d020978_T015:1 Zm00001d020978_T022:2 Zm00001d020978_T005:1 Zm00001d020978_T029:1 Zm00001d020978_T007:1 Zm00001d020978_T009:1 Zm00001d020978_T004:2 Zm00001d020978_T018:1 Zm00001d020978_T016:1 Zm00001d020978_T011:1 Zm00001d020978_T020:1 Zm00001d020978_T027:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.338851216 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
138434344-138434018(+) 138434253-138433838(-) |
Potential amino acid sequence |
MRTSAGCRNETCKDVSSTELIKDGPLLNILSKRVHNCDTLTTLMQSPPPPSSAPFGTCHVNAEE TSPVCDDNQVFTGIDNSVANPG*(+) MFADDDDELPFSHDAEDKSQSCWNDFNVLSKLASQPGLATELSMPVNTWLSSQTGEVSSAFTWQ VPNGADDGGGGDCINVVKVSQLCTLLLRIFKRGPSLISSVEDTSLHVSLRQPALVLIYIIIISD ASALIYYKLKYGAVQKVNVSNSVMFADDDDELPFSHDAEDKSQSCWNDFNVLSKLASQPGLATE LSMPVNTWLSSQTGEVSSAFTWQVPNGADDGGGGDCINVVKVSQLCTLLLRIFKRGPSLISSVE DTSLHVSLRQPALVLIYIIIISDASALIYYKLKYGAVQKVNVSNSVMFADDDDELPFSHDAEDK SQSCWNDFNVLSKLASQPGLATELSMPVNTWLSSQTGEVSSAFTWQVPNGADDGGGGDCINVVK VSQLCTLLLRIFKRGPSLISSVEDTSLHVSLRQPALVLIYIIIISDASALIYYKLKYGAVQKVN VSNSVMFADDDDELPFSHDAEDKSQSCWNDFNVLSKLASQPGLATELSMPVNTWLSSQTGEVSS AFTWQVPNGADDGGGGDCINVVKVSQLCTLLLRIFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |