Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d014900_circ_g.1 |
ID in PlantcircBase | zma_circ_008529 |
Alias | Zm05circ00055, zma_circ_0001907, GRMZM2G466292_C1 |
Organism | Zea mays |
Position | chr5: 67336254-67341288 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d014900 |
Parent gene annotation |
transcription factor jumonji (jmjC) domain-containing protein |
Parent gene strand | + |
Alternative splicing | Zm00001d014900_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d014900_T027:4 Zm00001d014900_T030:4 Zm00001d014900_T009:4 Zm00001d014900_T043:4 Zm00001d014900_T044:3 Zm00001d014900_T008:3 Zm00001d014900_T020:4 Zm00001d014900_T029:4 Zm00001d014900_T022:4 Zm00001d014900_T010:4 Zm00001d014900_T049:2 Zm00001d014900_T005:4 Zm00001d014900_T042:4 Zm00001d014900_T001:4 Zm00001d014900_T040:4 Zm00001d014900_T007:4 Zm00001d014900_T035:4 Zm00001d014900_T004:4 Zm00001d014900_T024:4 Zm00001d014900_T034:4 Zm00001d014900_T002:4 Zm00001d014900_T046:4 Zm00001d014900_T003:3 Zm00001d014900_T006:4 Zm00001d014900_T047:3 Zm00001d014900_T036:4 Zm00001d014900_T033:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.051607176 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
67340006-67336256(+) 67341204-67336256(+) |
Potential amino acid sequence |
MRQALPDLFDAQPDLLFHLVTMLNPSILQANSVPVYSVMQEPGNFIITFPRSFHGGFNLGLNCA EAVNFAPADWLPHGGIGANLYRLYRKAPVLSHEELLYVVAKG*(+) MVELGLIYIVYTAKRLSCHMRSFCMWLQRGEPKCWYGVPGAKANAFEQVMRQALPDLFDAQPDL LFHLVTMLNPSILQANSVPVYSVMQEPGNFIITFPRSFHGGFNLGLNCAEAVNFAPADWLPHGG IGANLYRLYRKAPVLSHEELLYVVAKG*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |