Detail information of BGIOSGA001446_circ_ig.1


General Information
CircRNA Name BGIOSGA001446_circ_ig.1
ID in PlantcircBase osi_circ_010061
Alias Chr01:21563062_21563352(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 22798036-22798326  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001446_circ_ig.2 BGIOSGA001446_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTCTTTTTTTCTATTTCTACCTGCTCAAGGTATTCATCATTCCAGTACAACTGTTGCAGTAG
AATGACAACAGATTCGTGTATAGGGAACTAGATTAGtgtttgtagttttcctatgattctagat
acatgtttgaaattttgggtctttttttttaaatcgcctatctccttcgcttgtagtcatttat
cattcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTTGTAGTTTTCCTATGATTCTAGATACATGTTTGAAATTTTGGGTCTTTTTTTTTAAATCG
CCTATCTCCTTCGCTTGTAGTCATTTATCATTCAATTAGTGAAGCATAAACTCATTTGATCTCC
TGATATTAATCAAAATTAGCATCCTTTTTCCTTTAGAAAGAAAGCCTTTTTCCATTTTAGCAAA
ATTCTTTTTTTCTATTTCTACCTGCTCAAGGTATTCATCATTCCAGTACAACTGTTGCAGTAGA
ATGACAACAGATTCGTGTATAGGGAACTAGATTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021